Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4980 ATGAAAAAGAATCCCTTTCTTTTTGTGGCTTCAATCCAAAGCCATCCCTTTCACCCTTTTTCTCCTTCCTCAAAACCCACATATAAAATAAAACACTTTCTCCTTGTTCTTCTTTCTTTCTTTCTTCCTCAACAATACACTCCAACCATATCACCATTTCATTTCTTTCAAAATATGTCTCTCACAGGCCGTCCTCGCGTTGTTGTCAACGGTGTTCGAAGAATGAGAACCTTCCACTATTTCTGGTGTCTCAATTGCCAACGTACTGTTAGAATACCATCAACAAATACCATTGCAAATTATGGCTCTTTCTGTCCATATTGCTTCCATCAATTGCGTTATGAACTTGATATATCAAGGCCAAGACTTCTCATGAATGCGCCGAATAACAACTACATGAACCCTCCCCCTCCTACTAATCAGTTAATGGATGGCTTAGCTTTCATTCTTGATCCATCTCTCAGAAGACAAGATCAAAACAACATAACACCACAATGGGAAACAGAACATGAAGATGATCAAAATCAAATTCAAAATCAAAATCCACAAGCATGGATTACACTCCGATTCGTAAGACCAACTCGTCCACCAAGGCCTATTGCACCACCACCGCCACAAAACTTGGCTCCTCAACTCAATGACATTGAAACCCCTTCATTAGATGAGTTCTTTGATGGGGTGATTCACAACAACATTCGACCAGGGCCGCCTCCAGCGTCACCTTCGGCCATTGAAGCCTTGCCAATGGTGAAAGTGACAGAAGGCCATTTAGCAAGTGACCCGAATTGTCCAATATGTAAAGATGAGTTTGAGATAGAAGTGGAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGCTTCAAATGCATAACACTTGCCCTGTATGCCGCCATGAGCTACAAGGCGTTGATAATAATAATAATGCTAATTACTACTATTTCCAAAATGAGAATGATCAACAAGGGTTCATGGGGTTTGAGGAATTTATAAGCAGCTTTAATTGGATCTGGAGCCAACTTGCTTCGATTAGGCCTATTCGTGCAGTCCTAGATTGGACTCGGTCCTATTTTGAGTTCCATGCCCGTGCTCGTAGTAGAAGTAGCTCTTGGTGGCGAGCATTGCTCATTTCTTAG 1155 0.4173 MKKNPFLFVASIQSHPFHPFSPSSKPTYKIKHFLLVLLSFFLPQQYTPTISPFHFFQNMSLTGRPRVVVNGVRRMRTFHYFWCLNCQRTVRIPSTNTIANYGSFCPYCFHQLRYELDISRPRLLMNAPNNNYMNPPPPTNQLMDGLAFILDPSLRRQDQNNITPQWETEHEDDQNQIQNQNPQAWITLRFVRPTRPPRPIAPPPPQNLAPQLNDIETPSLDEFFDGVIHNNIRPGPPPASPSAIEALPMVKVTEGHLASDPNCPICKDEFEIEVEVRELPCKHFYHSDCILPWLQMHNTCPVCRHELQGVDNNNNANYYYFQNENDQQGFMGFEEFISSFNWIWSQLASIRPIRAVLDWTRSYFEFHARARSRSSSWWRALLIS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4980 384 Pfam Ring finger domain 262 304 IPR001841 -
Mal4g4980 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 309 IPR013083 -
Mal4g4980 384 CDD RING-H2_RNF126_like 263 304 - -
Mal4g4980 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 377 - -
Mal4g4980 384 SMART ring_2 263 303 IPR001841 -
Mal4g4980 384 SUPERFAMILY RING/U-box 243 319 - -
Mal4g4980 384 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Mal4g4980 384 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 79 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4980 Mal-Chr4 129733981 129735331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4980 59 366 C3H Transcription Factor Family AT1G68180 31.511 6.82e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4980 K11982 - gmx:100793656 348.977