Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4942 ATGTCATTCCGCAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCATCATCACAGAGGAAAGTCTCATGGGTCTGTACAGGATTTGCATGATCAACCTCTAGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAATTACTATTTGATGTCATTCGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCACGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACGTTCCCCGTGTCTCTGAAGCAGCCAGGGCCACGAGACGGAATTATTCAATGCTTTATCAAGAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACCAGGAGAACAACCTACACCGAGTATGTTATTTCAATGGACGCTGACAACATCTCCAGATCAAGTAATACTTACATTGGAAAGCTGAGATCAAACTTTCTTGGGACAAAATTCATCATATATGATACACAGCCTCCCTGCACTTCTGCCCACATATGCCCTCCGGGGACTGGGAAGACGAGCCGTAGATTTTATTCTAAAAAGGTATCACCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGAACTCGAGGCCCAAGGAAGATGCATTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCGGAGCTTATTCACCGTTCCCTGGAGGACTCATTCCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCCATCGAGTTCAGCAGTTCACGGTTTTCTGAGATCGGGGGGTCCTGTAATGAGGACGATGATGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAATTTCCGGGGACGAGTAACTGTCGCTTCCGTTAAAAACTTTCAGCTGATTGCTTCCACACAACCACCTGCTGGCGCGCCGACACCGTCTCAACCAGCACCACCGGAATATGATAAGATTATTTTGCAATTTGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCTTTCCAAGCTTTTGCAATATGCTTGAGCAGCTTCGACACCAAGTTGGCGTGTGAATAG 1287 0.4514 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4942 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Mal4g4942 428 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Mal4g4942 428 PANTHER TUBBY-RELATED 1 428 - -
Mal4g4942 428 Pfam F-box domain 54 101 IPR001810 GO:0005515
Mal4g4942 428 Pfam Tub family 115 423 IPR000007 -
Mal4g4942 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Mal4g4942 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Mal4g4942 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Mal4g4942 428 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mal4g4942 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Mal4g4942 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Mal4g4942 428 Gene3D - 49 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4942 Mal-Chr4 129335690 129338097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4942 1 428 TUB Transcription Factor Family AT1G76900 70.282 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal4g4942 Tub 6.4e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4942 K19600 - gmx:100814578 816.609