Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4920 ATGTCTGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAGGTTAAAAGATGCATTTGAAAAGTATGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGAACTATTACTGTTGATAAAGCCCAGCCACAACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCAGAGATTATGGAGGTAGTCGAGGGTCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCGAGGGAGTGTCCTAGTGAAGGAGAAAGAGGAGGAAGGTATGGTGGCAGAGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTATGGTGGGCGCGACAGGGATGGTGGTGGTCGGGACAGGGATGGTGGTGGACGTGACAGGGACGGTGGTGGACGTGACAGGGACGGTGGTGGACGTGACAGGGATGGTGGTGGGCGTGACAGGGATCGTGATCGTGCTGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGA 675 0.5022 MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESRYSGGYGPDRNADRSYGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSGGHR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4920 224 MobiDBLite consensus disorder prediction 164 224 - -
Mal4g4920 224 Gene3D - 2 118 IPR012677 -
Mal4g4920 224 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Mal4g4920 224 MobiDBLite consensus disorder prediction 77 224 - -
Mal4g4920 224 Gene3D - 119 173 - -
Mal4g4920 224 PANTHER TRANSFORMER-2-RELATED 1 158 - -
Mal4g4920 224 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
Mal4g4920 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Mal4g4920 224 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Mal4g4920 224 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Mal4g4920 224 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 158 - -
Mal4g4920 224 MobiDBLite consensus disorder prediction 86 112 - -
Mal4g4920 224 MobiDBLite consensus disorder prediction 128 148 - -
Mal4g4920 224 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Mal4g4920 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mal4g4920 224 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4920 Mal-Chr4 128931941 128933461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4920 10 89 Eukaryotic Initiation Factors Gene Family AT1G71770 32.184 7.75e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4920 - - lang:109329957 251.906