Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4842 ATGGGATTGCTTCATAGAAAGTTGATGGCAAAATTATGTGACTTCCTATGTCACACAAAGTTGTCTAAACCAAATTGTTCATCAGACAAAGATTGCACTGTTTGCATCAAATTCTGCATCATAACCAATCCAGAATATCCTTATTACTATCCTCCACCACCACCACCACCACCACAACAAGATCACCACAAAATCAACAATTACTTTATCCTTACTCTTTCTGTTCTTGCTTTTGCTTTTTTTCTTGTTTGTATTCGTGCTATCTGTATTTTCAGGTCAAGAAGAAGAAGAAGAAGCTTAAGGGCAGTGGCACAATCATCACCATCAACAACTCAACAAGTTGATGAGAATTTTGATGAACAACAAGGTTCTATGATGGTGGATCATCCTATTTGGTATATTCGAACCCTAGGTCTTCATCAATCTGTTATAAATGCAATTAGTGTTTGTAAGTATAAGAGAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAAAATCTTAGACTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACTAATTGTCCTATGTGTAGGGCTCCAATTGTTAATAACCCTACAGTTGCTAGGGTTGAGTCTTTGGAGTCTGTTGTTGTTGTTGATGATTCTAGTTCAAGTTCGTTGGAACATATACAAATTGATGTTTTTGAGGAAAATATCGGTGAAAGTGAAACCAATTTAGGGCTTGAAAATAGTGTTTTTGATTCTGATTTGAGGAATAGGGAAGAAAATGAAGGAGGGCAATTTGAGGTATGTGAAAATGAAAGACAAGTTGTCGATGCGGTAAGCGTCGTTCGGCCTAGAAGATCTGTTTCTATGGATGATTCTTTTGTTCCAAATAACAATCTTGCTCTTGCAACTGTTCTATCAATAGAATCTAATGGTGGTAATGGTGATTCAAGTAAAATGAATTTCAATGATGATGCTATTTCAAAGGTTAATAATGGCAATGAGAATTTGGCAACTACTTCCAAAGGAAGTAGTAGCTTTTCTTTTAGGCCGACAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGGTCAAGTTCATATAATGGCAAATTTCTTCTGTCTTGGTTTAGCAGCAATCAGAAGAAGCCAAATGATATTCTGAGAAGCTTTTAA 1206 0.3607 MGLLHRKLMAKLCDFLCHTKLSKPNCSSDKDCTVCIKFCIITNPEYPYYYPPPPPPPPQQDHHKINNYFILTLSVLAFAFFLVCIRAICIFRSRRRRRSLRAVAQSSPSTTQQVDENFDEQQGSMMVDHPIWYIRTLGLHQSVINAISVCKYKRGEGLIEGTECSVCLSEFEEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVNNPTVARVESLESVVVVDDSSSSSLEHIQIDVFEENIGESETNLGLENSVFDSDLRNREENEGGQFEVCENERQVVDAVSVVRPRRSVSMDDSFVPNNNLALATVLSIESNGGNGDSSKMNFNDDAISKVNNGNENLATTSKGSSSFSFRPTRYLQGVPSPMKRSSSYNGKFLLSWFSSNQKKPNDILRSF* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4842 401 SMART ring_2 164 205 IPR001841 -
Mal4g4842 401 SUPERFAMILY RING/U-box 158 212 - -
Mal4g4842 401 Pfam Ring finger domain 163 206 IPR001841 -
Mal4g4842 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 392 - -
Mal4g4842 401 CDD RING-H2_PA-TM-RING 163 206 - -
Mal4g4842 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 214 IPR013083 -
Mal4g4842 401 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Mal4g4842 401 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 392 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4842 Mal-Chr4 127902760 127903965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4842 57 272 C3H Transcription Factor Family AT1G72220 44.700 1.47e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4842 - - lja:Lj6g3v2193690.1 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4842 4 127902760 127903965 Mal4g4842 4 127902760 127903965 ECH