Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4805 ATGGGGAGAGGAAAGATTGCAATTAGAAGGATCGACAATTCAACAAGTAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAGTTATCCATTCTTTGTGATGCTGAAGTTGGATTGATTGTCTTCTCCAGCACTGGAAAGCTTTATGATTATTCAAGCACTAGTATGAAATCTGTTATTGAGCGCTATAACAAACAGAAAGAGGAACAACATCAGCTAATGAATCCCGCTTCAGAAGTAAAGTTTTGGCAGACGGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTGCTGGGTTGGGTATTAAAGAACTGCAAACCCTGGAAAACCAACTGGAGATTAGTCTAAAGGGTGTTAGAATGAAAAAGGATCATATTTTGACTAATGAGATTAAAGAACTGCACCAAAAGGGAAGTCTGGTCCATCAAGAAAATGTAGAACTCCATAAAAAGATGGACCTCATTCAAAAAGAAAATGCAGAGCTACTGAAGAAGGTTTATGAAGCAAGGAGGACAAATGAAGAAAATGCAGCAACCAATCTTTCAGGCACTATCAGAAATGGATTCGATTTACATGCTCCTATCAGTCTCCAGCTAAGCCAGCCACAGTCTCAATACACTGAACCAGCAGCCAAAGCCATGAAATTAGGATTACAGCTGCATTAG 720 0.3986 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSVIERYNKQKEEQHQLMNPASEVKFWQTEAASLRQQLQYLQESHRQLMGEGLAGLGIKELQTLENQLEISLKGVRMKKDHILTNEIKELHQKGSLVHQENVELHKKMDLIQKENAELLKKVYEARRTNEENAATNLSGTIRNGFDLHAPISLQLSQPQSQYTEPAAKAMKLGLQLH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4805 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 238 - -
Mal4g4805 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mal4g4805 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mal4g4805 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g4805 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g4805 239 Coils Coil 163 195 - -
Mal4g4805 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 Coils Coil 86 113 - -
Mal4g4805 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Mal4g4805 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal4g4805 239 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4805 Mal-Chr4 127386090 127408581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4805 1 239 MADS-box Gene Family AT2G14210 61.667 3.84e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal4g4805 K-box 6.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4805 K09264 - gmx:100808145 388.267