Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4752 ATGTGGAGTACACCAGATCGTAGCAGTGCTACAGAACAAGGCAGTGTTCAAATGATATTGATTGATGAAAAGAATGGAAAAATTCATGCTTCTATAAGGAAACATTTGCTGCCAATTTTTAAGGATCAAATTGAAGAGGGTTCAACCTATGTTTTTGAAAAATTCATGGTTGCTCAAAATGATCCCACTTTCAAAACTACTAATCATAAGTATAAGTTGAACTTTATGGGAGGAACCATCATTTTCAAGGTCAATGCTACTGAGATTCCGGATCGGCTATTCAACTTTGTGCCTTTTGTTGAGATATTAGCTGCCCACAAGGAAGATCGTTTACTTGATGTTATTGGTCATGTTGTTGAGAAAGACACTGTAAAAGAAACTGTAAAGAATGGGAAGTCTAACAAGGTTATGGATGCAACATTGGAGGATTTAGAGGGGAATAGAATCCATTGCACCCGATGGGATGATTTTGCAATGAAAATGCAACAATGCTTAGATACTCATGATGGTACCCTACCTGTGATTGTTGTGTTTCAACTCTGCAAGCTGAAAAAGTATTATGGTACCATGGGTATTTCAAATGCTTTTTATGGTACAAAAATGATGTTGAATCCTAATATACCTGAGGTTTCTGATTATATTGAGAGGATGAATGCTGGCGATGTTGAACTCACTCAGGTTGTCAGTCAGATGACTGGTCCAACCATTGTTTCTTTGTCTGATGATTTACTTCAAACTCAGAGGAAAACCATTGAGGATTTACTCGAGTCAACTGAGAAATGTGTTGGAACTGTGTTGGCAAGAACATGTGAGCTTGAGACTGATGCTGGTTGGTTTTATAAAGCATGTAGTAAGTGTGCTTCGAGAATTACTCTTATGAATGGACAACTTTATTGTGACAAGTGCTCCTTACCAAGGACTGCTGTTCCACGGTTTAAGATACATGTTCAAGTTATAGATAATACAGGATCAACTACATTTGTATTGTTTGATCGTATTGTGTCTCAAGCTGTTGGGAGGTCTGCACAAGATTTCCTTGACGCAATGAATGAGGGGACTGATGCTGCATCTGAGTATCCACAAGAGCTGAACATGTTTGTTGATAAGAGGATGCTGTTCAAGGTTGAAGTCACTGATGCCAACCTATATCGTAATTGGCGTAGCTATACAGTCAAGAAACTTACTGAAGATCAAGATGTGATCAAAAAGTTCATATCGCAACACGGAATAAGTTTGTGTAATGATGAGGAAGAAGCTGCTTATGTTGAAGCTGTCACTACATTGGCTGATAATGATCCCATGGAGAAACTTGAGGAAGTTGACTCAAATAGCAAGGAAGAATTCGCCGTATCTGAATCAGCTGTGACTCCAACAAGCAAGACATTGGGCAAAAGAGTTGCTGATAGTGTGGACTTATTGGATGTTATTGATCTGGAAGACTGTAATTCATCTACCACAAAGGAGCCAAAAATGATTCGTATCTTGAAAATCAAAAACATTATGACATTCTTGCAACTATTGGACTCCCAACTGATTCAAACATGCAATGTACAATTAATGGTGAAGAGTCTGACGTACCGTCTAATTCAGGTGAATGTAAATTAG 1605 0.3826 MWSTPDRSSATEQGSVQMILIDEKNGKIHASIRKHLLPIFKDQIEEGSTYVFEKFMVAQNDPTFKTTNHKYKLNFMGGTIIFKVNATEIPDRLFNFVPFVEILAAHKEDRLLDVIGHVVEKDTVKETVKNGKSNKVMDATLEDLEGNRIHCTRWDDFAMKMQQCLDTHDGTLPVIVVFQLCKLKKYYGTMGISNAFYGTKMMLNPNIPEVSDYIERMNAGDVELTQVVSQMTGPTIVSLSDDLLQTQRKTIEDLLESTEKCVGTVLARTCELETDAGWFYKACSKCASRITLMNGQLYCDKCSLPRTAVPRFKIHVQVIDNTGSTTFVLFDRIVSQAVGRSAQDFLDAMNEGTDAASEYPQELNMFVDKRMLFKVEVTDANLYRNWRSYTVKKLTEDQDVIKKFISQHGISLCNDEEEAAYVEAVTTLADNDPMEKLEEVDSNSKEEFAVSESAVTPTSKTLGKRVADSVDLLDVIDLEDCNSSTTKEPKMIRILKIKNIMTFLQLLDSQLIQTCNVQLMVKSLTYRLIQVNVN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4752 534 Gene3D - 87 225 IPR012340 -
Mal4g4752 534 PANTHER REPLICATION FACTOR A 1, RFA1 19 445 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g4752 534 CDD RPA1_DBD_A_like 18 81 - -
Mal4g4752 534 CDD RPA1_DBD_C 249 393 IPR013955 -
Mal4g4752 534 CDD RPA1_DBD_B_like 113 217 - -
Mal4g4752 534 SUPERFAMILY Nucleic acid-binding proteins 246 396 IPR012340 -
Mal4g4752 534 Pfam Replication factor-A C terminal domain 272 381 IPR013955 -
Mal4g4752 534 Pfam Domain of unknown function DUF223 18 103 IPR003871 -
Mal4g4752 534 Gene3D - 238 405 IPR012340 -
Mal4g4752 534 SUPERFAMILY Nucleic acid-binding proteins 94 220 IPR012340 -
Mal4g4752 534 PANTHER BNAC07G49340D PROTEIN 19 445 - -
Mal4g4752 534 Gene3D - 1 83 IPR012340 -
Mal4g4752 534 SUPERFAMILY Nucleic acid-binding proteins 16 84 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4752 Mal-Chr4 126822607 126827948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4752 20 378 Core DNA Replication Machinery Family AT5G08020 23.861 2.02e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4752 - - mtr:MTR_1g105785 451.825