Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4727 ATGTCTGATCCCGTTATCCTCTCCTCTGATCAAACCTTTGAACGTTCTTCAATCCAACAATGGCTTGACCAAGGTCATAGGAAATGTCCAATTACCAAATTACCCCTCCTCCATACTTACCTCATTCCCAATCACACCCTCCGTGCCATCATTTCCAGTTTGGTCCCTCCTCCTCCGCCTCGGACTCAGAATCTTCCCCACCCTCCGTCTCCCCAAGCTCAAACCCAAATCCAAACCCTAACCCTAACCCAAACCCTAGTCTCTGCCCTAACCTCCTGTATGCCCACTAACTACAAACTTGACTCTCTCAACAAACTCACATTTCTCTCCCAACATGACCCCCTCTTCCGCCGCAACATCACCTACTTCTCTCTCATACCCGCTCTCTTTTCATGCATCGATGACGATGACGAGGCTCTTCGCCATAAATCTCTCTCCTTTCTCCTCAACCTCAGCCTTGATGGTGAAAACAAAGTTGGCCTAATGGCAGAAGGCATCCTCGACCGCCTCATTTCCATTCTCACTGCGGAAGTCTCCGATTGTCGGGCGGTGGCAGCAACCCTTATCACTAGCTTGGCAGTTCACGAGCTCAACAGTGCAACGATCGGTGCAGATCCACGTGCGATTGAAGCTTTGGTTTCTCTCATTCGCGATGGTGTTGGTAGAGAGAGAAAAGAAGCAGCTACTGCACTCTACGTTCTCTGTGGTTTGCCATATAATAAAGTAAAAGCTGTGGAATGTGGAGTTGTACCGGTTTTGCTTCGAAGGCTCGACTCCGACTCCGGTCTCCAACGGTGCGTAGAGGTTATTGGGGTATTGGCTGAGTGTAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGATGTGTTGAGGTTCTTGCTGGTGTTTTGAAGAATGGAAGTAGAATTGGTGTTGAGTATGCTCTTGTTGCTTTGAATCATCTCTGTAGTAACAGTGAAGAAAGTGTTACTGAAGCTGTTCGTGCTGGGGTTTTGGAAATTTGTTTTGCGTTGAAGCATCATGATAATGAGAAAGTGAGGGCAAATGCTTCTTCTTTGTTCCTGGTTTTGTGTCCGAGGAAGCAATGA 1089 0.4738 MSDPVILSSDQTFERSSIQQWLDQGHRKCPITKLPLLHTYLIPNHTLRAIISSLVPPPPPRTQNLPHPPSPQAQTQIQTLTLTQTLVSALTSCMPTNYKLDSLNKLTFLSQHDPLFRRNITYFSLIPALFSCIDDDDEALRHKSLSFLLNLSLDGENKVGLMAEGILDRLISILTAEVSDCRAVAATLITSLAVHELNSATIGADPRAIEALVSLIRDGVGRERKEAATALYVLCGLPYNKVKAVECGVVPVLLRRLDSDSGLQRCVEVIGVLAECKEAIEEMEKFGGCVEVLAGVLKNGSRIGVEYALVALNHLCSNSEESVTEAVRAGVLEICFALKHHDNEKVRANASSLFLVLCPRKQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4727 362 MobiDBLite consensus disorder prediction 52 73 - -
Mal4g4727 362 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 358 - -
Mal4g4727 362 SUPERFAMILY RING/U-box 1 54 - -
Mal4g4727 362 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Mal4g4727 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 56 IPR013083 -
Mal4g4727 362 SUPERFAMILY ARM repeat 75 358 IPR016024 -
Mal4g4727 362 MobiDBLite consensus disorder prediction 53 67 - -
Mal4g4727 362 Pfam U-box domain 1 52 IPR003613 GO:0004842|GO:0016567
Mal4g4727 362 Gene3D - 81 354 IPR011989 -
Mal4g4727 362 PANTHER U BOX DOMAIN-CONTAINING 1 358 - -
Mal4g4727 362 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4727 Mal-Chr4 126493960 126495048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4727 1 357 U-box Gene Family AT4G21350 49.862 4.08e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4727 - - mtr:MTR_2g011140 484.952