Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4725 ATGGCGGCTGATCAGCTTCTTGAACACTTCAAATGTCCGATTTCACTTGAAATCATGTCTGATCCTGTTATCCTCTCCTCTGGTCAAACCTTTGAACGTTCTTCAATCCAACAATGGCTTGACCGAGGTCATCGGAAATGTCCAATCACCAAATTACCCCTCCTCCATACTTACCTCATTCCCAATCACACCCTCCGTGCCATCATTGACAGTCTTGTCCCTCCTCCTCCGCCGCCTCAGGATCAGATTCTTCCCCACCCTCCATCTCCCCAAGCTCAAACCCAAACCCTAACCCTAACCCAAACCCTAATCTCTGCCCTAACCTCCTGTATGCCCACGAACTACAAACTTGACTCTCTCAACAAACTCGAATTTCTCTCCCAACATGACCCCCTCTTCCGCCGCAACGTCACCTACTTCCCTCTCATACCAGCTCTCTTTTCATGCATCGACGACGGTGATGAGGCTCTTCGCCATAAATCCCTCACCCTTCTCCTCAACCTCAGCCTTGATGGTGAAAACAAAGCTGGCCTAATGGCAGAAGGCATCCTTGAACGCCTCGTTTCCATCATCTCCACGGAAGTATCCGACTGTCGCGCGTTGGCAGCAACCCTCATCACAAGCTTGGCTGTTCTGGAGCTCAACATTGCAACGATCGGTGCACACCCACATGCCATTGAATCTCTAGTTTCTCTCATTCGCGATGGTGTTGGTAGAGAGATAAAAGAAGCAGCTACTGCACTTTACGCTCTCTGTCGTCGTTCTCCATATAATCAACTAAAAGCTGTGGAATGTGGATCTGTACCGGTTTTGCTTCGAAGGCTCGACGCGGGTCTCGAACGGTGCGTTGAGGTTATTGGGGTATTGGCTGAGTGTAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGATGTGTTGAGGTTCTTGCTGGTGTTTTGAAGAATGGAAGTAGAATTGGTGTTGAGTATGCTCTTTTTGCTTTGAATCATCTCTGTAGTAACAGTGAAGAAAGTGTTACTGAAGCTGTTCGTGCTGGGGTTTTGGAAATTTGTTCTGCGTTGAAGCATCATGATAATGAGAAAGTGAGGACAAATGCTTCTTCTTTGTTCCTGGTTTTGCGTCCGAGGAAGCAATGA 1137 0.4767 MAADQLLEHFKCPISLEIMSDPVILSSGQTFERSSIQQWLDRGHRKCPITKLPLLHTYLIPNHTLRAIIDSLVPPPPPPQDQILPHPPSPQAQTQTLTLTQTLISALTSCMPTNYKLDSLNKLEFLSQHDPLFRRNVTYFPLIPALFSCIDDGDEALRHKSLTLLLNLSLDGENKAGLMAEGILERLVSIISTEVSDCRALAATLITSLAVLELNIATIGAHPHAIESLVSLIRDGVGREIKEAATALYALCRRSPYNQLKAVECGSVPVLLRRLDAGLERCVEVIGVLAECKEAIEEMEKFGGCVEVLAGVLKNGSRIGVEYALFALNHLCSNSEESVTEAVRAGVLEICSALKHHDNEKVRTNASSLFLVLRPRKQ* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4725 378 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 375 - -
Mal4g4725 378 PANTHER U BOX DOMAIN-CONTAINING 2 375 - -
Mal4g4725 378 CDD RING-Ubox_PUB 10 51 IPR045210 -
Mal4g4725 378 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Mal4g4725 378 SUPERFAMILY RING/U-box 4 72 - -
Mal4g4725 378 Pfam U-box domain 8 71 IPR003613 GO:0004842|GO:0016567
Mal4g4725 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Mal4g4725 378 SUPERFAMILY ARM repeat 99 373 IPR016024 -
Mal4g4725 378 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Mal4g4725 378 Gene3D - 97 370 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4725 Mal-Chr4 126418789 126419925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4725 1 373 U-box Gene Family AT4G21350 50.532 4.86e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4725 - - mtr:MTR_2g011140 495.738