Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4632 ATGGCGGATGATGGATTTGAATTTCCGACACTGTTTGGTGACGATGATTCTGATGATGAAAAGCTTGCAATGGATATTGAATCGTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCTGAGAGTAGTCCCGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGATCCATGATAATTTTTTACTTCAAAATGGGAATTCCTTGCTTGACTCCGAACATGAAAACCAGGGACCTTCACAGACCTGCTCTTCCCCAAATGTTTTTGCTGGTCGTTACAGGGACTCGTTCTCTGTTGTTGGAAGTGATGAAGCTTGCTATGTAGAAAGGGCAGGAGTTTCTGAACATGAGATGCCTTCTTACAGTGTGGACACAAGTTTCCCCGAGGCATATTCAAATACTGTAACTGCTTGTAGAGATAATTTGAACCCGAGTCTGTGGAAGGATGACAATTATAGCCAAATCAAGCATGTGGGAGATGATGTAGAATCTGAACATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACGTTTGAAGATTATGAAACAGCTTTGAAAGACATTATTGGAGTTTCTAGGCAGCCAGAAAATGACTCCTGTACATCCTTTGAAATGCCATTTGTGGATGTTGACATACCTACACATTTTGGAAATTCAGCTGATTCTACTTTTTGTCAAGGTTCCAATGTTCCTAGTGATTTTAGTGGCTACTATTCATCTTTGAATTGTTACCAGGGTATAGATGTTAAACCTGTTGATAACGGCAGTTCTGGTTATTTTCCTAATGGTGTTAGTTCTGAATTCTGGAAAAATGAAGAGCCGATGAGGAATATGAAGGTTGAAAAAACGGAATGCTTAACTGATACTACTAATATGATTGGCGGCATGCATTTGAGCACTATCGGTCGGATCCCTTTTCATGACAGTCAATTTATGCCAGTAGATAATGAATATCCTTCATTTTTTCCTGGTAATGCTATATTTGAAGACAGTGAATCAGTGCAGCAATCATCTTGTGCTCCATATATTTCTTCTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGGGATGAAATGGTTATGCCTTACCAAAATACTTTTCACAATGACAATGCTCGTCCAGAGTTGAAACAATTACCTGGTATTTTCCCTACCACTGGATGTCAGAATTACGGTTTTTTCAAGGTGGAGGACAGTGATACAATTGTAACAACCGAGGATGCAAATTGTTATTATCAAGATCTTAATGATGAAACTGCTAATAAATTTCCAGGAAACATGGGAAATTTGAATTTCAGATCCATAGACAAATCTCTATCTATTGCCCGGGCATCAATTACCAACGGGAAGCAGTATAATTGTAGTATGAGTGAACTAGAGAGTAAACCAAGCGAATGTAAAAGTATTGATTCTCAACTTTCCAAAAGAAGTACTGAGGGATCCAATGATGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAATTCAATTCCCTTAATATGTCGCAATCTTCTAGATTTGATTATACCCAACCTTATATGGCAGGAGGCACAAGACCAAAGGCACGCGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCTCAGCCCAAGTCAGAAGTTAGTCCACCAGATGGACTGCTAGCAGTTCCTCTTTTACGTCACCAGAAGTTGTTGTGTCAGAAAATTGCCTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTCCATTACTTAAGACGTGCAATAATGCACAAAAAAGTGTATTACAAACCATGGATTTGGATGATGACCCACTTCCTGAGAATGGTATAGTGAAGAAGGAATCTATTGTGCGTCAAGATACATCTAATAGAAATGCAACCACAAGTGTCAATTTGTCAGTGCATGCAAAGGGCAGGCCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCCGACGAGCTGCATAATAAAGTAACCGGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGACAAAGAAAAAGGAATTTATGAAGATCATGCTGTGCCTAGTAAGAAAAGAAAATGCCCTCCTAGTTCTAAAAGCAGCAAGAAGGTTTTGGATAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCTACCATCAAGATTCCTATCAATAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTGTTAAAGACGATCATGTTACGTCGGACAAAAGGCACACTTCTTGACGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAGAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTGGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACCGTGAAGCAAAACTACGTGAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCGGGAAAAACAGTTATTTCTTTTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATATGTAATGATGCTCCTGAAGAAGCCGTTGTTTCAGCCTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCAGTGTTTCCCAAAGCCACATTGAACAGTTCTTTATCTGATCCGGCTTGTGATCTTTTGCCTGGTTACTCTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCAGTCTCAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACATGTGCAGAGCACGTCTAGGGAAAGTTCTGATTGCAGCTCCACTTCTGCCGATAATGGAAAATCCATTAGTGATGTTCCTGAAAAGAAAACTGTTGGTTCTCTTGGGGAGAAGGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAGGCGTGTCTTAAAAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTTCTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACTCCCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCACGTTCTCATGTTAGATCTATGGTGGAATCCTACAACCGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTAACTGTCAAAGATACAGTCGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCGTTTGGAGAGGATGGAACTAGTGGTCGTCAAACCCGTCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3918 0.4132 MADDGFEFPTLFGDDDSDDEKLAMDIESFLSVLDEDCVPSESSPEDSSLKDVSPGESGIHDNFLLQNGNSLLDSEHENQGPSQTCSSPNVFAGRYRDSFSVVGSDEACYVERAGVSEHEMPSYSVDTSFPEAYSNTVTACRDNLNPSLWKDDNYSQIKHVGDDVESEHASHSSIIENVDGTFEDYETALKDIIGVSRQPENDSCTSFEMPFVDVDIPTHFGNSADSTFCQGSNVPSDFSGYYSSLNCYQGIDVKPVDNGSSGYFPNGVSSEFWKNEEPMRNMKVEKTECLTDTTNMIGGMHLSTIGRIPFHDSQFMPVDNEYPSFFPGNAIFEDSESVQQSSCAPYISSEGQSFNVKAEGDEMVMPYQNTFHNDNARPELKQLPGIFPTTGCQNYGFFKVEDSDTIVTTEDANCYYQDLNDETANKFPGNMGNLNFRSIDKSLSIARASITNGKQYNCSMSELESKPSECKSIDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAEFNSLNMSQSSRFDYTQPYMAGGTRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQKLLCQKIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCNNAQKSVLQTMDLDDDPLPENGIVKKESIVRQDTSNRNATTSVNLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTGKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDKEKGIYEDHAVPSKKRKCPPSSKSSKKVLDSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELRKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPREKQLFLLKCLEASLALCGICNDAPEEAVVSACGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLSDPACDLLPGYSGSEVEDSEPCSQSQPYDSSKIKAALEVLQSLSKPHVQSTSRESSDCSSTSADNGKSISDVPEKKTVGSLGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTSGRQTRLTVDDLKYLFMM* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4632 1305 MobiDBLite consensus disorder prediction 1113 1136 - -
Mal4g4632 1305 CDD DEXDc_SHPRH-like 569 893 - -
Mal4g4632 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1002 1060 IPR013083 -
Mal4g4632 1305 Gene3D - 556 639 IPR038718 -
Mal4g4632 1305 SMART ring_2 1009 1047 IPR001841 -
Mal4g4632 1305 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 437 1304 - -
Mal4g4632 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1304 IPR027417 -
Mal4g4632 1305 ProSitePatterns Zinc finger RING-type signature. 1024 1033 IPR017907 -
Mal4g4632 1305 MobiDBLite consensus disorder prediction 1113 1142 - -
Mal4g4632 1305 MobiDBLite consensus disorder prediction 755 779 - -
Mal4g4632 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 893 IPR027417 -
Mal4g4632 1305 MobiDBLite consensus disorder prediction 755 769 - -
Mal4g4632 1305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1300 IPR001650 -
Mal4g4632 1305 Pfam Helicase conserved C-terminal domain 1150 1247 IPR001650 -
Mal4g4632 1305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 855 IPR014001 -
Mal4g4632 1305 SUPERFAMILY RING/U-box 1006 1065 - -
Mal4g4632 1305 Pfam Zinc finger, C3HC4 type (RING finger) 1009 1045 - -
Mal4g4632 1305 Pfam SNF2-related domain 595 970 IPR000330 GO:0005524|GO:0140658
Mal4g4632 1305 Gene3D - 665 760 IPR038718 -
Mal4g4632 1305 Gene3D - 762 894 IPR038718 -
Mal4g4632 1305 ProSiteProfiles Zinc finger RING-type profile. 1009 1048 IPR001841 -
Mal4g4632 1305 MobiDBLite consensus disorder prediction 36 64 - -
Mal4g4632 1305 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 437 1304 - -
Mal4g4632 1305 SMART helicmild6 1164 1247 IPR001650 -
Mal4g4632 1305 SMART ultradead3 565 870 IPR014001 -
Mal4g4632 1305 CDD SF2_C_SNF 1150 1257 - -
Mal4g4632 1305 Gene3D - 908 1304 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4632 Mal-Chr4 125265668 125275363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4632 471 1304 RAD5 or RAD16-like Gene Family AT1G61140 61.970 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal4g4632 SNF2_N 4.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4632 - - gmx:100805307 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4632 4 125265668 125275363 Mal4g4632 4 125265668 125275363 ECH