Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4586 ATGGCGATACATTTATACAAAACTTCTATCCCGAGCACCCGCAATGGAGCCGTAGGCAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTATGGACAGCATCATTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATATCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTCGAATCGTAACTATAGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGATATACCATTGTTTATGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTCGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTCGGGAATGTTGGAGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCACATGGTGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCGGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 837 0.4277 MAIHLYKTSIPSTRNGAVGSQVKSNSRNRLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGYTIVYGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRSRKRNKYSDNLILRRRSK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4586 278 MobiDBLite consensus disorder prediction 228 278 - -
Mal4g4586 278 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 3 276 - -
Mal4g4586 278 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 15 278 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 PANTHER RIBOSOMAL PROTEIN L2 3 276 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 MobiDBLite consensus disorder prediction 262 278 - -
Mal4g4586 278 Gene3D - 1 111 IPR012340 -
Mal4g4586 278 SUPERFAMILY Nucleic acid-binding proteins 3 123 IPR012340 -
Mal4g4586 278 SUPERFAMILY Translation proteins SH3-like domain 125 275 IPR008991 -
Mal4g4586 278 ProSitePatterns Ribosomal protein L2 signature. 220 231 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 Pfam Ribosomal Proteins L2, RNA binding domain 40 115 IPR022666 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 Gene3D - 116 198 IPR014722 -
Mal4g4586 278 Hamap 50S ribosomal protein L2 [rplB]. 1 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mal4g4586 278 Gene3D Ribosomal protein L2, domain 3 199 277 IPR014726 -
Mal4g4586 278 TIGRFAM rplB_bact: ribosomal protein uL2 5 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mal4g4586 278 Pfam Ribosomal Proteins L2, C-terminal domain 123 253 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mal4g4586 278 SMART Ribosomal_L2_C_2 122 255 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4586 Mal-Chr4 124637401 124638934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4586 51 237 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 36.181 4.71e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4586 K02886 - jre:26380845 522.316