Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4538 ATGGCATTGTCACTATTGAGAAATCACGCCACATGGTCGGCATTCAATTTGTTCACCAATGGTCTTCGCCGTTTCTCTACTGCTGAGGTTTCGAACACTATTCCTCAGGAGGCACGCGAGAGGATGATGTATTCTGACATAAACTCACAAATTGGGAGTTGTATGCCTCTCTCTTCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAACCCAGGGCAAGGTGGAAAGCTTGTTCGTGCAGCTGGTACCAATGCAAAGATCTTGAAAGAGCCCACATCAGCATACGTTTTAGTCCAACTTCCATCTGGTGTTAAGAAGTTGATTGATACTCGATGCAGGGCCACTGTCGGTACTGTCTCTAATCCAACTCACGGTGATCGCAAGCTTAGGAAGGCTGGTCATAGCAGATGGCTCGGTAGGAGACCAGTTGTTCGGGGTGTAGCTATGAATCCTGTGGATCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTGCGTGGGGGAAAGGATCCCGCACTCCTTGGGGTAAGCCAACTAAGGGTGGTTTCAAGACTGGACCTCTCAAGCGCAGAAAGTAG 591 0.4873 MALSLLRNHATWSAFNLFTNGLRRFSTAEVSNTIPQEARERMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYVLVQLPSGVKKLIDTRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWGKPTKGGFKTGPLKRRK* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4538 196 PANTHER RIBOSOMAL PROTEIN L2 43 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mal4g4538 196 Gene3D - 41 121 IPR014722 -
Mal4g4538 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Mal4g4538 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mal4g4538 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mal4g4538 196 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Mal4g4538 196 TIGRFAM rplB_bact: ribosomal protein uL2 45 190 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mal4g4538 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mal4g4538 196 MobiDBLite consensus disorder prediction 150 196 - -
Mal4g4538 196 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 43 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4538 Mal-Chr4 124000057 124001003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4538 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.167 5.20e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4538 - - gmx:100792418 295.819