LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g4524	ATGGTTTTATCATCACAATCACAATTCCAAACAGAATTACCCTTAAATGAGAATGACTCACAAGACATGGTCATATACCAAGTCCTAAACGAGGCTAATGCTCTAACAAACACATTTGTACCACATAAGAACCACCAACATCACCATCAAGCCATGTTGAATGGCTTAGAACCAACAAGGACTATCACCAAGAAGCACTATAGAGGGGTAAGGCGCCGTCCATGGGGGAAATACGCGGCAGAGATTCGCGACTCGGCTCGTCATGGAGCTAGAGTATGGCTTGGAACTTTCCAAACAGCTGAAGAAGCTGCTATGGCTTATGATAGAGCTGCTTTTAAGATGAGAGGCTCAAAGGCTTTGCTTAATTTCCCAGCTGAAACTGTTGCAGCAGCTTCCTTGAAAATGGAATTTCCTAATTCTAAGCTCAATTTGAATAATAATCATGATTCTGAATCAAGTGGTAGCAGTTCTTACACCAATTCAAATTCCAATTCCAATTTGAGTACTCAACTTGAAAGCACAAGTGGCACGTGCTGCTAG	540	0.4185	MVLSSQSQFQTELPLNENDSQDMVIYQVLNEANALTNTFVPHKNHQHHHQAMLNGLEPTRTITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAETVAAASLKMEFPNSKLNLNNNHDSESSGSSSYTNSNSNSNLSTQLESTSGTCC*	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g4524	179	CDD	AP2	65	125	IPR001471	GO:0003700\|GO:0006355
	Mal4g4524	179	PRINTS	Ethylene responsive element binding protein signature	67	78	IPR001471	GO:0003700\|GO:0006355
	Mal4g4524	179	PRINTS	Ethylene responsive element binding protein signature	90	106	IPR001471	GO:0003700\|GO:0006355
	Mal4g4524	179	PANTHER	PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5	5	143	-	-
	Mal4g4524	179	SUPERFAMILY	DNA-binding domain	66	125	IPR016177	GO:0003677
	Mal4g4524	179	MobiDBLite	consensus disorder prediction	142	179	-	-
	Mal4g4524	179	ProSiteProfiles	AP2/ERF domain profile.	66	124	IPR001471	GO:0003700\|GO:0006355
	Mal4g4524	179	Gene3D	AP2/ERF domain	65	127	IPR036955	GO:0003700\|GO:0006355
	Mal4g4524	179	SMART	rav1_2	66	130	IPR001471	GO:0003700\|GO:0006355
	Mal4g4524	179	PANTHER	DNA-BINDING DOMAIN	5	143	IPR044808	GO:0003700\|GO:0009873
	Mal4g4524	179	Pfam	AP2 domain	66	116	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g4524	Mal-Chr4	123736907	123737446	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g4524	13	124	AP2-EREBP Transcription Factor Family	AT5G47220	53.543	2.20e-40	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mal4g4524		AP2	2.6e-15	CL0081