Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4483 ATGGGTCTAGATGAGAGTGAAGTTAGAGTTGAGGTATTGGATTTGGTTCATGAAGTGCTTGATGAGAATTTGAGTAATTTGGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGATGGGTAAGGATTTAGTATCCAATAAGGAGCTAAAGGAGGTGCCTGAAGAAGTTAAGGTTCAGGAAAAGTGTGATGAATTGGTTATGGTTGATCAAGGAACTAGTTATAATTCAAGCAATTTGGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGGTTGATAATGATTCAGGATCCAATAAGGTGGAGGATGAGGAAGTTAAGGTTGAGGAAAAGTGTGATGAATTGGTTATGGTTGATCAAGATTCAAGCAATTCGGTGAATCAGGAAGTGGTTGAGAGAGTGATTGTAATAGAGTCTGTTCATGTTCAGAGTGAGTGTGTTAATGGAGAGCAGAGGAAATTGGAAGCAAAAGATGTTGAATCAGGGCTTAGCTTAGTTTCAATGAAAGCACCGAAAGGGATGCCTGAAACTGATTCATGTGTGATTGATATGAAGTGTAGGAGCCATAAAGGGTTTTATGAGAGTTCACAAGGTGAAAGGATATGTAGGATTTGTCATCTGGCTTTTGGGCAGGCATCGGATGCAACGGCTGTCGAAAATGGTAGTGCTACAAGTGGAGATTTTATTCAGCTCGGTTGTGCGTGTAAAGATGAGCTCGGCATTGCACATGTTCATTGTGCTGAGGTGTGGTTCAAGCTCAAGGGAAACAGGTTATGTGAAATATGCGGCGAGACTGCAAAAAATGTTTCGGGTGTTGCTAGTAATGGATTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACGACGGTAACTCATCCCACAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAATTTCTTAATGGCGTGCCTGGTAATAGCTTTCATTCTGCCATGGTTTTTTCATGTAGATATGTTCTAG 993 0.4149 MGLDESEVRVEVLDLVHEVLDENLSNLVEGVGEVGTSREMGKDLVSNKELKEVPEEVKVQEKCDELVMVDQGTSYNSSNLVEGVGEVGTSREVDNDSGSNKVEDEEVKVEEKCDELVMVDQDSSNSVNQEVVERVIVIESVHVQSECVNGEQRKLEAKDVESGLSLVSMKAPKGMPETDSCVIDMKCRSHKGFYESSQGERICRICHLAFGQASDATAVENGSATSGDFIQLGCACKDELGIAHVHCAEVWFKLKGNRLCEICGETAKNVSGVASNGFMEEWNDRRFMDNDGNSSHRFGGCWRGQPFCNFLMACLVIAFILPWFFHVDMF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4483 330 SMART ringv_2 202 264 IPR011016 GO:0008270
Mal4g4483 330 Pfam RING-variant domain 203 263 IPR011016 GO:0008270
Mal4g4483 330 SUPERFAMILY RING/U-box 198 266 - -
Mal4g4483 330 ProSiteProfiles Zinc finger RING-CH-type profile. 195 270 IPR011016 GO:0008270
Mal4g4483 330 PANTHER ZINC FINGER, RING-CH-TYPE 122 330 - -
Mal4g4483 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Mal4g4483 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 122 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4483 Mal-Chr4 123092120 123094136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4483 129 329 C3H Transcription Factor Family AT5G05830 33.010 2.18e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4483 - - gmx:102668208 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4483 4 123092120 123094136 Mal4g4483 4 123092120 123094136 ECH
Mal7g4349 7 110757698 110759496 Mal4g4483 4 123092120 123094136 PCT