Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4479 ATGACCAAATTATACTCTTGTCACTATTGGCTCTATATTCTTTATGCCTCACTCTTTTATTACTTCTTCACTTGCTTAGCTGAAACCACCGATGAATTTGCACTTCTTGCATTCAAATCCTCAATTACCTTAGACCCTTATCATATGCTTAGTAATTGGTCAATTTCCTCTTCTACTTCTTTCTCTTCATGCAATTGGATTGGTGTTACTTGTGATGAACATCATGGAAGAGTAAAGGCATTGAATCTTAGTAACATGGGCCTTGAAGGTACCATTTCTCCTCAATTGGGAAATCTCTCTTTCCTTGTTGCTCTTGATCTACATGGTAATAGTTTCCATGGGTTTATTCCTCAATCTATATCCAACTTGTCAATGTTAGAGTATCTAGGTTTGAAATCAAATCTCATCAAAGGAACCATTCCACAAGTTATTGGTCAACTTCGTGCGTTGAGGATTTTGGATATTAGAAATAACAAACTCTCTGGAATCATACCAACAACAATTTCCAACATGTCTTCACTTGAAGAAATCCATTTAGCAAATAACTCCTTATCTGGTGAAATTCCTAAAGGAATTGGTGATCTTACACAACTAAGAACGCTGAATCTTCGAAGTAATTTTCTCTCAGGCAACATATTATCAACATCAATCTTCAACAACTCATCGTTGCAAAAATTGTCACTTGGTTTTAATAATCTGACTGGCACTCTTCCATCAAATGTTTGTCAAGGGCTTCCAAACCTTAGAGCACTCTATCTTTACTTTAATGATTTCTCTGGTGAGATGCCAAAAGTTTGGCATCATTGCAAAGAGTTGGAAGATTTGGAACTATCCGTGAATAATTTTGACAAGGGACGTATACCAGCTGAAATTGGAAATTTGACCAAGCTTCAATATTTGTATCTTACAAACAACAACTTGGAGGGTGAAATTAATTTATCTCTCTTCAACATCTCTTCTTTGAGAGCGATCGACCTTGATGAAAACAATTTATATGGAAGCCTTTCAGACGAGATGGGTCATCAATTTCCTCAACTTGAAGTATTTTCTATACTGGCTAATCATTTTGAAGGTGTCATTCCACAATCCATTGGAAACTGCACATTGTTACAAATATTGGGATTAGAGGGTAATTTTTTTACAGGCTCAATACCAATGGAGATTGGCCATCTCAATCAACTTCAGCTTCTACAAATGGGAAATAACAGCTTTAGTGGACCTATTCCTTTGAAAATCTTCAACATTTCAACATTGGAATATTTGGATCTGGAACTAAATTCTTTCTCAGGCATGCTTCCCTCAAATTTGGGATTTGGTCTTCCTAACCTACACCAACTGCACTTGTATGGAAACAAATTTGTTGGAAAAATTCCAAATAGTATATCCAATGCTTCAAATCTCATCATGATTGACTTGAGTTCAAATGATTTTAGTGGAATCATACCCAACTCATTTGGAGATTTAAGATTCCTTGAATCACTCGTCATAGGTGGCAATAATTTAACAACAGATGATTCTCTTGAATTCAACTTCCTAACCTCACTGACAAGTTGCAGATATTTGAAATATCTTGAAGTATCAGATATGATCAATTTTCAGTTAAAACTTCCCAAGTCCATTGGAAACTTAACTTTAGAACACTTTTGGGCAAATTCTTGTGGAATTAATGGAAATATTCCACTAGAAATCGGAAACATGAGCAACTTGATTCAATTATCTATGGGTTGGAATGATTTGAATGGAGGAATTCCTAGTACAATTAAAGGGTTACATAATCTTCAATCTTTGAATCTTTGCTACAATGGACTGCAAGGATCCATCATTGACGAGCTTTGTGAAATTAAAAGTTTGAGTGATTTGAATTTAACAAGCAATAAGCTTACAGGAGTGTTACCAACATGTTTAGGAAATATGACTTCACTTAGAAAGTTTTACGTAGGATCTAATAGGTTAACCTCTAGGATACCTTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAATTTATCCACCAATGCCTTAATTGGAAATCTTCCACCTGAGATTAAGAATTTGAGAGCTCTTATACTATTAGATATCTCAAAAAATAATATCTCAAGCAACATTCCAACAGCTCTAAGTTTCTTGAATACTTTAGAAATTCTCTCCTTAGCAAATAACCAATTGAATGGGTCTATTCCAACATCACTTAGTGAAATCGTAAGCTTGAGTTTCTTGGATTTGTCTCAAAATCTCATAACTGGTGTGATCCCAAAATCCTTAGAGTCACTTTCTCATCTTAGATACATAAATTTGTCATACAATAGAATGCAAGGAGATATTCCTCATGGAGGACCTTTCAAAAGCTTCACAGCTCAATCTTTCATGCATAATGAAGGACTTTGTGGTAGTCCTCGCTTACAAGTACCTCCATGTAATAAGCATAGGAAAAAGTCAAAGAAAAAGATGCTATTAATCATATCCACATCATTCATAATTGTTGTGTTTGGCACTTTGGTTGTTGCATGCATAATTCTTCGAATACATAAAAGGAAAAAGGTTAAAACTCCACTTGAAAGGGGTTTATCAACTATAGGAGTTCCAAGAAGGATTTCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGTGGTTTTGGATCTGTGTACCAAGGAATGCTTTCAAGTGGGAAGATGGTAGCAGTTAAAGTACTTAACTTAACATTGGAAGCAACATCAAGAAGCTTTGATGCAGAATGCAATGCAATGCGTAACCTTCGGCATCGAAATCTCGTTCAGGTTATCAGTAGTTGCTCAAATCCGGATTTCAAATCTATTGTGATGGAGGTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCGGATAACTATTGTTTGGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCGCTGGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTGGATGAAGATATGGTTGCACATGTTAGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGGACATTCAAAAACTCATACGGAGACTTTAGCTACTCTTGGCTATGTTGCACCAGAGTATGGATTTGAGGGAGTAATTTCAGTTAAAGGAGATGTGTACAGCTATGGAATAATGCTAATGGAAATGTTCACGGGAAAGAAGCCTACAAATGAAATGTTTTCAGAAGAATTATCCTTGAAAACTTGGATTAGTGAATCAATGGCTAGTTCAATTATGGAAGTTGTGGATCACAATTTAGTCTCACAACATGAGAAAGAAATTCATGATATTTTAGCTTTAGCATTGAGATGTTGTGAAGACTCACCTGAAGCGCGAATTAATATGACAGATGTGACTGCATCGTTAATCAAGATCAAGACATCATTCATCCAGTGA 3456 0.3562 MTKLYSCHYWLYILYASLFYYFFTCLAETTDEFALLAFKSSITLDPYHMLSNWSISSSTSFSSCNWIGVTCDEHHGRVKALNLSNMGLEGTISPQLGNLSFLVALDLHGNSFHGFIPQSISNLSMLEYLGLKSNLIKGTIPQVIGQLRALRILDIRNNKLSGIIPTTISNMSSLEEIHLANNSLSGEIPKGIGDLTQLRTLNLRSNFLSGNILSTSIFNNSSLQKLSLGFNNLTGTLPSNVCQGLPNLRALYLYFNDFSGEMPKVWHHCKELEDLELSVNNFDKGRIPAEIGNLTKLQYLYLTNNNLEGEINLSLFNISSLRAIDLDENNLYGSLSDEMGHQFPQLEVFSILANHFEGVIPQSIGNCTLLQILGLEGNFFTGSIPMEIGHLNQLQLLQMGNNSFSGPIPLKIFNISTLEYLDLELNSFSGMLPSNLGFGLPNLHQLHLYGNKFVGKIPNSISNASNLIMIDLSSNDFSGIIPNSFGDLRFLESLVIGGNNLTTDDSLEFNFLTSLTSCRYLKYLEVSDMINFQLKLPKSIGNLTLEHFWANSCGINGNIPLEIGNMSNLIQLSMGWNDLNGGIPSTIKGLHNLQSLNLCYNGLQGSIIDELCEIKSLSDLNLTSNKLTGVLPTCLGNMTSLRKFYVGSNRLTSRIPSSFWNLKDILEVNLSTNALIGNLPPEIKNLRALILLDISKNNISSNIPTALSFLNTLEILSLANNQLNGSIPTSLSEIVSLSFLDLSQNLITGVIPKSLESLSHLRYINLSYNRMQGDIPHGGPFKSFTAQSFMHNEGLCGSPRLQVPPCNKHRKKSKKKMLLIISTSFIIVVFGTLVVACIILRIHKRKKVKTPLERGLSTIGVPRRISYYELVQATNGFSESNLLGKGGFGSVYQGMLSSGKMVAVKVLNLTLEATSRSFDAECNAMRNLRHRNLVQVISSCSNPDFKSIVMEVMSNGSVEKWLYSDNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGHSKTHTETLATLGYVAPEYGFEGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELSLKTWISESMASSIMEVVDHNLVSQHEKEIHDILALALRCCEDSPEARINMTDVTASLIKIKTSFIQ* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4479 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Mal4g4479 1151 ProSitePatterns Protein kinases ATP-binding region signature. 883 905 IPR017441 GO:0005524
Mal4g4479 1151 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 148 - -
Mal4g4479 1151 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 270 386 - -
Mal4g4479 1151 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 148 283 - -
Mal4g4479 1151 SUPERFAMILY L domain-like 43 361 - -
Mal4g4479 1151 SUPERFAMILY Protein kinase-like (PK-like) 857 1142 IPR011009 -
Mal4g4479 1151 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Mal4g4479 1151 SMART serkin_6 877 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4479 1151 Gene3D Ribonuclease Inhibitor 30 146 IPR032675 -
Mal4g4479 1151 Gene3D Ribonuclease Inhibitor 147 214 IPR032675 -
Mal4g4479 1151 Gene3D Transferase(Phosphotransferase) domain 1 953 1150 - -
Mal4g4479 1151 SMART LRR_typ_2 440 464 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 221 244 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 99 123 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 195 220 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 734 757 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 686 710 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 171 194 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 245 268 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 614 637 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 638 661 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 758 782 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 147 170 IPR003591 -
Mal4g4479 1151 SMART LRR_typ_2 294 318 IPR003591 -
Mal4g4479 1151 Pfam Leucine rich repeat 616 675 IPR001611 GO:0005515
Mal4g4479 1151 Pfam Leucine rich repeat 713 770 IPR001611 GO:0005515
Mal4g4479 1151 Pfam Leucine rich repeat 149 206 IPR001611 GO:0005515
Mal4g4479 1151 Pfam Leucine rich repeat 441 501 IPR001611 GO:0005515
Mal4g4479 1151 Gene3D Ribonuclease Inhibitor 507 815 IPR032675 -
Mal4g4479 1151 SUPERFAMILY RNI-like 439 776 - -
Mal4g4479 1151 Pfam Protein kinase domain 878 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4479 1151 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 148 283 - -
Mal4g4479 1151 ProSiteProfiles Protein kinase domain profile. 877 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4479 1151 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 342 1150 - -
Mal4g4479 1151 SMART LRR_sd22_2 638 664 - -
Mal4g4479 1151 SMART LRR_sd22_2 147 173 - -
Mal4g4479 1151 SMART LRR_sd22_2 566 592 - -
Mal4g4479 1151 SMART LRR_sd22_2 294 315 - -
Mal4g4479 1151 SMART LRR_sd22_2 734 760 - -
Mal4g4479 1151 SMART LRR_sd22_2 710 733 - -
Mal4g4479 1151 SMART LRR_sd22_2 220 243 - -
Mal4g4479 1151 Gene3D Phosphorylase Kinase; domain 1 860 951 - -
Mal4g4479 1151 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 14 148 - -
Mal4g4479 1151 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 270 386 - -
Mal4g4479 1151 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 342 1150 - -
Mal4g4479 1151 SUPERFAMILY L domain-like 352 458 - -
Mal4g4479 1151 Gene3D Ribonuclease Inhibitor 215 506 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4479 Mal-Chr4 123012556 123018082 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4479 12 1146 Receptor kinase-like Gene Family AT5G46330 34.731 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mal4g4479 Pkinase 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4479 - K13420 mtr:MTR_6g040210 1277.69