Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4478 ATGGCCAAATTATACTCTTCTCACTCTTGGCTCTGTATTCTCTCTGTCTCACTCTTTTATTACTTCACTTGCTTAGCTGTGAGTAGTAAAAAAAACATAACCACCGATGAATTTGCACTTCTTGCATTCAAATCCTCTATTACCTTAGACCCTTATCATATGCTTAGTAATTGGTCAATTTCCTCTTCTACTTCTTTCTCTTCATGCAATTGGATTGGTGTTACTTGTGATGAACATCATGGAAGAGTTAAGGCATTGAATCTTAGTAACATGGGCCTTGAAGGTACCGTTTCTCCTCAATTGGGAAATCTCTCTTTCCTTGTTGCTCTTGATCTACAAGGCAATAGCTTCCATGGTGAGTTACCACATGAGTTACTTAAGTTGAAGAGATTGAAATTGTTGGATTTGAGCAACAATGATTTTGTTGGAGAAATTCCTTTAAGGATAGGGGACTTATCAAAACTTCAACATTTGGATCTTGGCTATAATAATATTGTTGGAGCTATTCCTCAATCTATATCCAATTTGTCAAAGTTAGAGTACCTAGATTGGAAATCAAATCTCATCAAAGGAACCATTCCACATGCTATTGGTCAACTTCCTATGTTGAGTACTTTGGATATTAGAAATAACAAGCTCTCTGGAATCATACCAACAACAATTTCCAACATGTCTTCACTTGAAGAAATCCATTTAGCAAATAACTCCTTATCTGGTGAAATCCCGAAAGGAATTGGTGATCTTACACAACTGAGAACAGTGAACCTTGATCATAATTTTCTATCGGGCAACATATTATCGACATTATTGTTCAACAGTTCATCGTTGCAAAATTTGAACCTTGGTGATAATAATCTATATGGCATTCTTCCATCAAATATTTGTCAAGGGCTTCCAAACCTTAGTATACTCAATCTTTATGCTAATGATCTATCTGGTGAGATGCCAACTGTTTGGCGTTATTGCAAAGAGTTGGAAGATTTGGAACTTGCCTTCAATAATTTTGAGAAAGGAAATATACCAGCTGATATTGGAAACTTGCCCAAACTTCAATTCTTGTATCTTAAAAGCAACAACTTGGAGGGTGAAATTCCGTTCTCCCTTTTTAACATATCTTCTTTGATAAGTATCAATCTTGATCGAAACAATTTAAATGGAACTCTCCCAGATGAGATGTGTCATCAACTTCCTCAACTTGAACTATTTACTCTACTCACTAATCATTTTGAAGGAATCATTCCACGATCGATTGGCAACTGCACATTGTTACAAGTGTTGACTTTAGAAGATAACTTTTTTTCAGGTTCAATACCAATGGAAATTGGCCATCTCAGTCAACTTTGGGTTCTACAAATGGGAGAGAATAGCTTGAGGGGGCCTATTCCTTCAAATGTATTCAACATTTCAACGTTGAAAATTTTGCATTTTGAGCTAAATTCTCTAACAGGCACTCTTCCATCGAATTTGGGATTTGGTCTTCCTAACCTACGGATACTAGAAATTTATGGAAACAAATTTGTTGGAAAAATTCCAAATAGTATATCAAATGCTTCAAATCTCGTCGTAATTGATTTTAGTATTAATGAATTTAGTGGAACCATACCCAACTCATTTGGAGATTTAAGATTCCTTAAATCACTCAACATAGCTGGCAATAATTTGACAACAGATGATTCTCTTGAATTCAACTTCCTAACTTCACTGACAAGTTGCAGATATTTGAAATATCTTGAAGTATCATATATGATCAATTTTCAGTTAAAACTTCCCAAGTCCATTGGAAACTTAACTTTAGAACACTTTTGGGCAGAATCTTGTGGAATTATTGGAAATATTCCACTAGTAATTGGAAACATGAGCAACTTGATTCAATTATCTCTGGGTTGGAATGATTTGAATGGAGGAATCCCTAGTACAATTAAAGGGTTACATAATCTTCAATCTTTGAATCTTTGCTACAATGGACTGCAAGGATCCATCATTGATGATCTTTGTGAAATTAAAAGTTTGAGTGATTTGAATTTAACAAACAATAAGCTTTCTGGAGTGTTACCAACATGTTTAGGAAATATGACTTCACTTAGAAAGTTTTACGTAGGATCTAATAGGTTAACCTCTGAGATACCTTCCTCATTTTGGAGTCTCAATGATATTTTAGAGGTAGACATATCCTCCAATTCTTTAACTGGAAATCTTCCAATGAAGATTAGTAAATTAAGAGCAATTTTGCTATTAGATCTGTCAGGCAATCAAATTTCAAGCAACATTCCTGAAACCATAGGTTTGTTAACAACTTTGCAGACTCTTTCCTTAGCACGGAACGATTTAAATGGAGTAATTCCCACATCACTTGGTGAACTGTTAAGCTTGAGCTTCTTAGACTTATCACAAAATCTTATAACTGGTGTGATCCCAAAATCCTTAGAGTCTCTTTCTTATCTTAAAGACATAAATTTGTCATACAATAAATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAAAAGATTCACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGCAGTCCTCGCTTACAACTACCTCAATGTGATCAACATAGGAAAAAGTCAAAGATGCTATTAACCATATGCATATCATCCATAATTGTTGTGTTAGGCATTTTGGTTATTGCATGCATAATACTTCGAATGTATAAAAGGAAAAAGGTTGAAAATCCACTTGAAAGGGATTTATCCACTATTGGAATTCCAAGAAGGATTTCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAGTGACCGTAATTTACTTGGAAGGGGTGGCTTTGGATCTGTGTATCAAGGAATGCTTTCAAGTGGGAAGATGGTAGCAATTAAAGTACTTGACTTGACATTGGAAGCAACACCGAGAAGCTTTGATGCAGAATGCAATGCAATGCGCAACCTTAGGCATCGAAATCTCGTTCAAATTATCAGTAGTTGTTCAAATCCTGATTTCAAATCTCTAGTGATGGAATTCATGACAAATGGAAGTGTGGAAAAATGGTTATACTCGGATAACTATTGTTTGAATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCGTTGGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTATTACTCGATGAAGATATGGTTGCACATGTTTGTGATTTTGGGATTTCCAAGCTCTTGGATGAAGGACATTCAAAAACTCATACAGAGACTTTAGCTACTCTTGGCTATGTTGCACCAGTTTTATTACTAAACTGCTCCACGAGATCGTTAGGAAAATAA 3330 0.3538 MAKLYSSHSWLCILSVSLFYYFTCLAVSSKKNITTDEFALLAFKSSITLDPYHMLSNWSISSSTSFSSCNWIGVTCDEHHGRVKALNLSNMGLEGTVSPQLGNLSFLVALDLQGNSFHGELPHELLKLKRLKLLDLSNNDFVGEIPLRIGDLSKLQHLDLGYNNIVGAIPQSISNLSKLEYLDWKSNLIKGTIPHAIGQLPMLSTLDIRNNKLSGIIPTTISNMSSLEEIHLANNSLSGEIPKGIGDLTQLRTVNLDHNFLSGNILSTLLFNSSSLQNLNLGDNNLYGILPSNICQGLPNLSILNLYANDLSGEMPTVWRYCKELEDLELAFNNFEKGNIPADIGNLPKLQFLYLKSNNLEGEIPFSLFNISSLISINLDRNNLNGTLPDEMCHQLPQLELFTLLTNHFEGIIPRSIGNCTLLQVLTLEDNFFSGSIPMEIGHLSQLWVLQMGENSLRGPIPSNVFNISTLKILHFELNSLTGTLPSNLGFGLPNLRILEIYGNKFVGKIPNSISNASNLVVIDFSINEFSGTIPNSFGDLRFLKSLNIAGNNLTTDDSLEFNFLTSLTSCRYLKYLEVSYMINFQLKLPKSIGNLTLEHFWAESCGIIGNIPLVIGNMSNLIQLSLGWNDLNGGIPSTIKGLHNLQSLNLCYNGLQGSIIDDLCEIKSLSDLNLTNNKLSGVLPTCLGNMTSLRKFYVGSNRLTSEIPSSFWSLNDILEVDISSNSLTGNLPMKISKLRAILLLDLSGNQISSNIPETIGLLTTLQTLSLARNDLNGVIPTSLGELLSLSFLDLSQNLITGVIPKSLESLSYLKDINLSYNKLQGEIPDGGPFKRFTAQSFMHNEALCGSPRLQLPQCDQHRKKSKMLLTICISSIIVVLGILVIACIILRMYKRKKVENPLERDLSTIGIPRRISYYELVQATNGFSDRNLLGRGGFGSVYQGMLSSGKMVAIKVLDLTLEATPRSFDAECNAMRNLRHRNLVQIISSCSNPDFKSLVMEFMTNGSVEKWLYSDNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVCDFGISKLLDEGHSKTHTETLATLGYVAPVLLLNCSTRSLGK* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 394 492 IPR032675 -
Mal4g4478 1109 Pfam Leucine rich repeat 765 824 IPR001611 GO:0005515
Mal4g4478 1109 Pfam Leucine rich repeat 203 259 IPR001611 GO:0005515
Mal4g4478 1109 SUPERFAMILY RNI-like 492 830 - -
Mal4g4478 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 202 336 - -
Mal4g4478 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 152 - -
Mal4g4478 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 151 294 - -
Mal4g4478 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 13 152 - -
Mal4g4478 1109 SUPERFAMILY Protein kinase-like (PK-like) 908 1102 IPR011009 -
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Mal4g4478 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 202 336 - -
Mal4g4478 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 151 294 - -
Mal4g4478 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 298 439 - -
Mal4g4478 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1047 1059 IPR008271 GO:0004672|GO:0006468
Mal4g4478 1109 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Mal4g4478 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 398 1096 - -
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 560 868 IPR032675 -
Mal4g4478 1109 Gene3D Phosphorylase Kinase; domain 1 911 1003 - -
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 493 559 IPR032675 -
Mal4g4478 1109 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Mal4g4478 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 398 1096 - -
Mal4g4478 1109 SMART LRR_typ_2 787 810 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 274 297 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 298 321 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 691 715 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 667 690 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 444 468 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 541 564 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 739 763 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 152 176 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 493 517 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 248 273 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 347 371 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 224 247 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 104 128 IPR003591 -
Mal4g4478 1109 SMART LRR_typ_2 200 223 IPR003591 -
Mal4g4478 1109 SUPERFAMILY L domain-like 389 487 - -
Mal4g4478 1109 SMART serkin_6 928 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4478 1109 SUPERFAMILY L domain-like 48 408 - -
Mal4g4478 1109 Pfam Protein kinase domain 930 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4478 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 298 439 - -
Mal4g4478 1109 Gene3D Transferase(Phosphotransferase) domain 1 1004 1106 - -
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 188 295 IPR032675 -
Mal4g4478 1109 Gene3D Ribonuclease Inhibitor 296 393 IPR032675 -
Mal4g4478 1109 ProSiteProfiles Protein kinase domain profile. 928 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g4478 1109 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Mal4g4478 1109 SMART LRR_sd22_2 787 813 - -
Mal4g4478 1109 SMART LRR_sd22_2 493 519 - -
Mal4g4478 1109 SMART LRR_sd22_2 619 645 - -
Mal4g4478 1109 SMART LRR_sd22_2 200 226 - -
Mal4g4478 1109 SMART LRR_sd22_2 691 717 - -
Mal4g4478 1109 SMART LRR_sd22_2 152 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4478 Mal-Chr4 122966016 122986215 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4478 13 1096 Receptor kinase-like Gene Family AT5G46330 34.265 5.14e-159 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mal4g4478 Pkinase 1.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4478 - K13420 gmx:100784397 1056.59