Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4464 ATGGTAACCCCGAGATTTACAAATTCGGTAACACAAGCAACTGATAATGGAATCCGTAGCCGAAAGAAATCATCAAGAGGTCACCACAGGTTCGTAGGAGTTCGTCAAAGGCCATCCGGAAGATGGGTAGCAGAGATCAAAGACTCACTACAGAAAGTTAGGCTTTGGCTTGGAACATTCGACACAGCCGAAGAAGCAGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAATTGCCAGAATCTGAAACAAATGGTGGTGAAGGTTCGAAGCGCGGTGCTGGTTCCAAATTCATGCTAGAGAATACTGAGCCTTTTTCTTTTGAGGATGTTAGTGAATCAGGTTCAGGTTCAGATCATGGTCTTCTTGGTGCACTCAAGGCAAAACTTTTTGATGGAAAAGAAGGGAAATTTTCATTTTCATTTCCTTCTAGTAGCATGGTTTCAAAATCAACTCAGAATTGTTCTGAAAAGAAAGATTCATCATCAGCAATTTATTGCCTCTCTCAGATGAATGAAGCTCATGCAAATACTCTGCCTAGTTCATTGAGTACTTCATCAAACACTTTTGCTAAGAGTGTGGCTATCCCAAATCATGATCATGAAATTTGTCAAACACCATCTATGACAAACATGTTATGGTCCAATGAAATAGAAAATGAATTACCTTGGTCTACTCAGATGAGTCATGTTCATGACAATAGTAATAGTTTGCTTGCATCTGGAAATACATCAAATTTTCCATGGCCACTAATAGAGTCCAATGTTGACATGACATGTATGGACCAAGGGATACTAAATAGTAACAGAAGTGATCAAATGAATATGATGAACATGCAGTTACCTCTAATTGGTGGAGCAAGTACTGATGGGTTTTGGACATTGGATCAGCAGCAACAGTTTGTGCAATGTGAGAATAATAATAATAGTTGGTTTGGTTCTGGTGGTGGATCTTGGGATCCTCTTATCTATGTGCCATCTGAGCTAGCTTGA 1020 0.4 MVTPRFTNSVTQATDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESETNGGEGSKRGAGSKFMLENTEPFSFEDVSESGSGSDHGLLGALKAKLFDGKEGKFSFSFPSSSMVSKSTQNCSEKKDSSSAIYCLSQMNEAHANTLPSSLSTSSNTFAKSVAIPNHDHEICQTPSMTNMLWSNEIENELPWSTQMSHVHDNSNSLLASGNTSNFPWPLIESNVDMTCMDQGILNSNRSDQMNMMNMQLPLIGGASTDGFWTLDQQQQFVQCENNNNSWFGSGGGSWDPLIYVPSELA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4464 339 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Mal4g4464 339 MobiDBLite consensus disorder prediction 84 105 - -
Mal4g4464 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 10 156 - -
Mal4g4464 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 208 334 - -
Mal4g4464 339 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 208 334 - -
Mal4g4464 339 MobiDBLite consensus disorder prediction 1 18 - -
Mal4g4464 339 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 SUPERFAMILY DNA-binding domain 31 87 IPR016177 GO:0003677
Mal4g4464 339 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Mal4g4464 339 MobiDBLite consensus disorder prediction 1 34 - -
Mal4g4464 339 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4464 Mal-Chr4 122782991 122784010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4464 19 86 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.70e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal4g4464 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4464 - - mtr:MTR_2g016730 555.058