Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4458 ATGACTAGGGCTATTCGAAATAGGGTACTCAAAGATGCTAATGGTGATATTAGTGATCATCTACGCAACCATATCCATTTAACAAATTGTATTCACTTGAAGAACCATATGCATAAAAACAGTCCAATACTTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGCTTCAAAGATCGCGGTCTCTTCGGGATCCTTCTGCAAGTCCTCCATCATGGCACTCTCCTTCTGTAGTTGACTTGCTTTTCAAAAGAGCCGATAATGATGGTGTGAGTCAAGGGGGAAGAAGGTCTGTAGGTAATGACAGTAGGAAGGAAGGTAGGAGATTGTCTGGAATTGGAAACTCGCCTCCGTTGGTGAGTAAAGGTACATCGAGAGTTGCTCCCGGTGAGGCTAGTAGGGGTAATGATGTGGTAGCGACGGCAACTAGTGAACGAAGTAGCAGGAACGGAATGGGGAATGGGAGGAGAGTTGGGAGAGAAGAATCTGGGAGGAAGAGTAATAGGCCTGATTATTTGGAAGCTATTAGTCAAGAGCAACTTCTTCATGAAGCCGGCAAAAGTTTGGCTGAAGATGTTGTTTCAAGGCATTCTCAATCGATAGAGAGAAAGAGTAGACAGAGGGGGAAGAACGTTCGAGATGTTCAAGCTAAGACTCTTTCTGAACAGCTGAATGATGTTCCTTTGGATAGTGATGATTTGGCGTCATCGAACATTCATTTCCGGGCAAGGTTTCCAAGACAGGAGAAAATTGTTGAGGAGGCACAAGCCAGCATGCGCGGTCAGGGAAATGGAATTAATAGGACAAAAAGGCGTAAATTTCGAAGCGCAAGAAGAGCTCGGGTTGCTACAACATCAAGAGATATTGGAGCTGAAAATGAGTTGTCTGTGGCTTCCAACTCATTCGCTCAGGGTTCAGTTCACGATAAATATCACTCGGAGGAGGTTGATGGGTATGCAGATGATAATGTTACTAGGGCTCCGAAAAATGGGTGTGGCATGCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGATATTGCTGGTAGAAGTTTGTCCTGTGGTTTATCCGACTCAAGGTTAAAGAAAGGGACGTTAACTTCCAATGGAAGAAACATTTCTGAGATGCCTGTGGCAGCTGACTGCTCTAGCTCATGTTCTAACTCTGAAGCTGAGGCACTGCCTTTACTAGTTGATGCATCTGGATCTCATGCAAGCACTGAAAATGCTTGTTGGGGCCGTGGATATTCTGGCGAACTAGGTATTTATGGTGATAATTTATTCAATCAAGATATTGATTCTGATCTTGCCTCTGAAGCTAGATCTGGTAGCCAACATAAGTTGAGACGGAATCATCATGGTAGACACCAAAGTTTAACACAAAAATACATGCCACGAACCTTCAGAGATATGGTCGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTGACGAGACGGAAAGTTGGATTGCTGTATGTGTTTTACGGTCCCCATGGCACAGGGAAAACTTCGTGTGCTCGCATATTTGCCAGAGCATTGAATTGTAGTTCGTCGGAACACCCGAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGAAAGAGTAGAAATATAAGGGAAGTAGGTCCAGTCAGTAATTTTGACTTTGAGAACATCAGGGATCTACTCGACAATATGATTGTTTCTCAGCTTCCGTCGCAGTACAGAATATTTATTTTCGATGATTGCAATACTCTGTCAGCAGATTGTTGGAACGCTATATCGAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTTAAGGATTCAGATATTGTATATTCACTGCACTGGATTGCAACCAAAGAAGGGCTAGATATTGATAAGGATGCCTTGAAACTCATTGCATCAAGGTCCGACGGATCATTGAGAGATGCTGAGATGACACTTGAACAACTTAGTTTGCTTGGGCAGAGAATTTCCGTTCCTCTTGTTCAAGAGCTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCTGACACAGTTAACACTGTGAAGAATTTGAGGGTGATAATGGAAGCGGGTGTTGAACCATTAGCTTTGATGTCACAGCTTGCAACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACTAAAGAAAGGTGCAGACGGAAGTTCTTCCGGAGACAACCATTATCCAAAGAAGACATGGAAAAGCTTCGCCAGGCTTTGAAAACTTTATCTGAGGCGGAGAAGCAGTTAAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATGGGTTGCCAACTTCATCTGATAATAGTTTCAACCATAGTCCTTTCGCTCTAAATAATGGAAATGTGAAAGAAGCTCCGAGGAACACCGGTAATCCGGTTGAAATTCCTAACAGAACAAGGCGAATGTCAATGGATACTAGAATGGAAAATTCTAATGCTGGAAGTTCTGCAGATAGAAGGCATAGTGTGTCTGGTTATGCTCCTCAACATACTTATTCACATTCCACCGATAAGACTAGGATCAATGAAAGACAGACTTTGGATAGAAACCGCAAAGAAATTGAAGAGATATGGTTGGAGGTGTTAGAGAGGATTCACCATCCTGGTCTCAAAGAGTTTTTGTATAAATCAGGCAGGCTGATCTTCATTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAACTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTTCTTGGATCTTCCGTAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCTCCTGCTCAACTTCCTCTTGTATTACCTTCTATCAATGATGGTTCATCTCAGATTAGGGACTTAAATGATGTTGGCACTGAAAAGAGAAGGAGTGAAATTGTAGAAGAAGAAGAAGCTTCTCATATGGAGCACAAGAATAATGAGCAACAGGTTGATGCTCACGTAACGTATAAAAATCTAGAAGGTACAAGTATGGGACAAGTGTCAGCTTCCCAAAAAATACCGATCGTTAAGTCCCATTTAGACCGAAGAAAGCTTAGTGAGCAAAGTCAAAGTCGAAGTCTTGTAAAAAGTAAGGTATCTCTTGCCCATGTAATCCAGCAGGCAGAAGGTCAGCGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGATTGGAGCCAAGATCAAGGAGCTTGCTATGCTGGAAAGCATCTAGAGCGACTCGTAGGAAGCTGTCGCGCTTGAAAATCCGAACCCGAAAATCAACTGCGTTGCTGAACCTTGTCTCATGTGGGAAGTGTCTCTCCACAAAATCTCCAAGGTAG 3528 0.4252 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRADNDGVSQGGRRSVGNDSRKEGRRLSGIGNSPPLVSKGTSRVAPGEASRGNDVVATATSERSSRNGMGNGRRVGREESGRKSNRPDYLEAISQEQLLHEAGKSLAEDVVSRHSQSIERKSRQRGKNVRDVQAKTLSEQLNDVPLDSDDLASSNIHFRARFPRQEKIVEEAQASMRGQGNGINRTKRRKFRSARRARVATTSRDIGAENELSVASNSFAQGSVHDKYHSEEVDGYADDNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSLSCGLSDSRLKKGTLTSNGRNISEMPVAADCSSSCSNSEAEALPLLVDASGSHASTENACWGRGYSGELGIYGDNLFNQDIDSDLASEARSGSQHKLRRNHHGRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVTRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIRDLLDNMIVSQLPSQYRIFIFDDCNTLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYSLHWIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFNHSPFALNNGNVKEAPRNTGNPVEIPNRTRRMSMDTRMENSNAGSSADRRHSVSGYAPQHTYSHSTDKTRINERQTLDRNRKEIEEIWLEVLERIHHPGLKEFLYKSGRLIFISFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCESNKDAGSPAQLPLVLPSINDGSSQIRDLNDVGTEKRRSEIVEEEEASHMEHKNNEQQVDAHVTYKNLEGTSMGQVSASQKIPIVKSHLDRRKLSEQSQSRSLVKSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRTRKSTALLNLVSCGKCLSTKSPR* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4458 1175 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 460 808 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mal4g4458 1175 Gene3D - 635 697 - -
Mal4g4458 1175 PANTHER PROTEIN STICHEL-LIKE 3 184 1142 - -
Mal4g4458 1175 CDD HLD_clamp_pol_III_gamma_tau 634 697 IPR045085 -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 188 213 - -
Mal4g4458 1175 Pfam DNA polymerase III subunits gamma and tau domain III 690 749 IPR022754 GO:0003887
Mal4g4458 1175 Gene3D - 452 631 IPR027417 -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 862 899 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 832 851 - -
Mal4g4458 1175 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 184 1142 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 136 150 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 86 170 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 442 461 - -
Mal4g4458 1175 Pfam DNA polymerase III, delta subunit 477 634 - -
Mal4g4458 1175 CDD AAA 475 634 - -
Mal4g4458 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 681 IPR027417 -
Mal4g4458 1175 SUPERFAMILY post-AAA+ oligomerization domain-like 705 808 IPR008921 GO:0003677|GO:0006260
Mal4g4458 1175 Coils Coil 770 797 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 261 285 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 154 168 - -
Mal4g4458 1175 SMART AAA_5 493 634 IPR003593 -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 832 850 - -
Mal4g4458 1175 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4458 Mal-Chr4 122677203 122682477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4458 460 758 Core DNA Replication Machinery Family AT1G21690 23.684 6.79e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4458 - - gmx:100809005 1868.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4458 4 122677203 122682477 Mal4g4458 4 122677203 122682477 ECH