Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4454 ATGGCTTCAGGGGCAATTTTCTCGTCGCTGCGGCGGCGAAGATCACCGACGCTGGAAGCTTTTCTTGCTCCAGTTGATTTAAGCGACGTTGCTTTGGTTCAAACCCTTGTAACGGTGGTGAATGAGCTTGTGGGTTGTTTTTCAAAGCGTTCTTTTTTCTTTCAGAGGAAAAATACGAGGTCTTTGATTAGAAAAGTTGAGGTTTTTCAGGTTCTTTTGGAGTATTTGAATGATTCGGGTTCGGGTTCTTGTGTTCCGCCTACTGGGTTGCTTTGTTTGAAAGAGCTTTATTTGTTGTTGTATAGGTCAAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACCCTTTTGGATGTTTTTCCTGTTAAGGATATTGGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTGTTGAAGCAATCAAGGAGGGCTAAGTTGTTTATAGATATGGAAGATGATGCTCTTAGGATTCGGTTCTTTGAGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCAGCTGAATTGCGAGCTTTTTATGTTGATAGGTTGAAGATTGTTGATGCTGCTTGTTGTAGAACTGAAATTGAGGCTTTAGAGGAGCAGATTGTTAATCACGAGGGTGATATCGAGCCTACTATTTCGGTGCTTAAAGGGTTGGTGGCTATGACGCGGTATTGTAGGTTTTTGATATTTGGATTTGAGGAAGATGAGCTTGATTTCGAAAATGGAAGTCAGAAGAAGAATCCGAAGAAGGGTTTGATTACTCAAGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGTTGTCCGATATCGTTGGATTTGATGAAAGATCCGGTGATTATTTCCACCGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGCCCAAAATCAGGTCAAACACTTGCTCACACTCGTCTTGTTCCGAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGTAGTGCTCATGGAATTCCTCTAGATCCACCAGAAGTGATGGAAGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCCGCTCTTGAAGCCAACAGAGAAACTGCAAATCTTCTCATTCAACAGCTAGCTAATGGATCGCAATCTGGAAAGACTATAGCTGCTAGGGAGATCCGATTGCTTGCAAAAACTGGCAGAGAAAATCGCGCCTTCCTTGCAGAAGCGGGGGCGATTCCTTATCTTCGGAACTTGCTTTCGTCGCCTAATTCTGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACCTATCCATATATGACAAGAACAAAAGCCGGATCATGGATGAGGTAGGTTGTCTCAGATCAATTGTCGATGTTTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCAGTCCATAACTATAAGAAGATAATCGCAGACGAGACCGGAGCCGTTGAAGCCCTAGCAGGGCTTTTGCAAGATGGGACTCCTCGAGGAAAGAAGGATGCAGTAACAGCTTTATTTAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATTGAGGCAGGAGCAGTTACAGCTCTAGTTGAGGCTTTAGGGAATGAAGGAGTTGCCGAGGAAGCAGCAGGTGCCATAGCCTTGATCGTTAGGCAGCCTTTCGGAGCCAAAGCATTGGTGAATCAGGAAGAGGCAGTAGCAGGGTTGATAGCAATGATGCGTTGTGGCACGCCGAGGGGTAAGGAGAATGCAGTTGCGGCGTTGCTCGAGTTATGCCGGAGTGGAGGTTCAGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTATTGCCGGATTACTTCAAACCCTGCTTTTTACCGGGACAAAGCGAGCTAGACGAAAAGCCGCGTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCAAACTAGGGATACAAGCTTTGCTGCTGGTGATGTTTCAGTACCAATGTCCATCTCTGTACCTGTAATATAG 2160 0.4407 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVGCFSKRSFFFQRKNTRSLIRKVEVFQVLLEYLNDSGSGSCVPPTGLLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDIGLSKDVREQVELLLKQSRRAKLFIDMEDDALRIRFFEFLDEFENGRIPDSAELRAFYVDRLKIVDAACCRTEIEALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLIFGFEEDELDFENGSQKKNPKKGLITQEIAETFLTVPKDFCCPISLDLMKDPVIISTGQTYDRSSISRWMDEGHTTCPKSGQTLAHTRLVPNRALRNLIVQWCSAHGIPLDPPEVMEAMGEAFASACPTKAALEANRETANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLSSPNSVAQENSVTALLNLSIYDKNKSRIMDEVGCLRSIVDVLRFGHTTEARENAAATLFSLSAVHNYKKIIADETGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGNEGVAEEAAGAIALIVRQPFGAKALVNQEEAVAGLIAMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPAIAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDTSFAAGDVSVPMSISVPVI* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4454 719 Coils Coil 214 234 - -
Mal4g4454 719 PANTHER U BOX DOMAIN-CONTAINING 12 700 - -
Mal4g4454 719 Gene3D - 394 514 IPR011989 -
Mal4g4454 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Mal4g4454 719 SUPERFAMILY RING/U-box 279 364 - -
Mal4g4454 719 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Mal4g4454 719 SUPERFAMILY ARM repeat 391 672 IPR016024 -
Mal4g4454 719 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Mal4g4454 719 CDD RING-Ubox_PUB 295 337 IPR045210 -
Mal4g4454 719 Gene3D - 515 675 IPR011989 -
Mal4g4454 719 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 700 - -
Mal4g4454 719 SMART arm_5 509 549 IPR000225 GO:0005515
Mal4g4454 719 SMART arm_5 550 588 IPR000225 GO:0005515
Mal4g4454 719 SMART arm_5 466 507 IPR000225 GO:0005515
Mal4g4454 719 SMART arm_5 589 630 IPR000225 GO:0005515
Mal4g4454 719 SMART arm_5 424 464 IPR000225 GO:0005515
Mal4g4454 719 Gene3D - 27 146 IPR036537 GO:0007166
Mal4g4454 719 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Mal4g4454 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Mal4g4454 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Mal4g4454 719 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4454 Mal-Chr4 122655648 122657807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4454 1 718 U-box Gene Family AT1G29340 68.033 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4454 - - mtr:MTR_2g018010 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4454 4 122655648 122657807 Mal4g4454 4 122655648 122657807 ECH