Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4438 ATGATGGAAGAAGCTGAGGGTAGTTCCAATAGCAGCATGCCTCCTTTTCTTACAAAGACTTATGAGATGGTTGATGATCCTTCAACTGATGCCATTGTTTCATGGAGTGTTACCAATAGAAGTTTCATTGTTTGGAATCCACCTGATTTTTCAAAAGATTTGTTGCCTAAATACTTTAAGCATAGTAACTTCTCAAGTTTCATCAGACAGCTTAATACCTATGGCTTTAGAAAAATTGATCCAGAGCAATGGGAATTTGCAAATGATGATTTTGTAAGAGATCAACCACATCTTATGAAGAATATCCGTAGGCGCAAACCAGTTCATAGCCATTCTTTGCCTAATGCTCATGGCCAAGGGGCTTCTGCTCCACTCACAGAATTTGAACGGTGGAGTTTGAAAGCGGAGATTGAAAAACTCAAACACGAAAAAGAACAACTGCTTCTCGAATGTCAGAGACAGGAACAGGAGAGTAAAATGAATGACATACAATTACAGCAATCAAAGGATCATTTGGAAACGTTGGAACAGAAGCAGCAAAGTATGCTCTCTTCTGTTGCTAAAGCGCTGCAGATACCCGAGATTGAGTTTTGTATCTCGCCACTGACAGAAAATACGGAGAGAAAACGGAGGTTTCCAAGAAATAGGTCTTTTAGTAATGAGGCTGGAATTGAAGATTCTATGGGAACTTCTCAAGTACTACCTAGAGAAAACAGCGAGAGTGCGTCTGTTCTCTCGTTAAACATGGAACGATTAAATCTGCTCAACTCATCGATGATGTTTTGGGAGAACATTACAAATGATATTGGTAACACTTCTTTTCAAAGCCATCCGAACGTAGATTTTGATGATTCTATGAATTCTGTTGGTAGTCCAGTAATATCTTGTGTGCAACTAGATGTTGAAGTTCAGCCCAAGTCACCGGAAATCGACATGAACTCTGTGCCAGTTGTAGTCGTTCCTGATCCAGCTGCAACTGAGCCGGAGGTAATCGTTGTTCATAATCCTGTTGCAACTGAGCCAGCGGTAACCAATGCTCGTGATCCTGTTGCAACTGACCCAACTGTTGTTGTTGTCCCTGATTCTGTTGCACCAAAAGAACTAACTGTTGAAACAACCCCGGTTACTACTGGTTATAATGACGAATTTTGGGAACAATACTTAAAATGA 1170 0.4051 MMEEAEGSSNSSMPPFLTKTYEMVDDPSTDAIVSWSVTNRSFIVWNPPDFSKDLLPKYFKHSNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRDQPHLMKNIRRRKPVHSHSLPNAHGQGASAPLTEFERWSLKAEIEKLKHEKEQLLLECQRQEQESKMNDIQLQQSKDHLETLEQKQQSMLSSVAKALQIPEIEFCISPLTENTERKRRFPRNRSFSNEAGIEDSMGTSQVLPRENSESASVLSLNMERLNLLNSSMMFWENITNDIGNTSFQSHPNVDFDDSMNSVGSPVISCVQLDVEVQPKSPEIDMNSVPVVVVPDPAATEPEVIVVHNPVATEPAVTNARDPVATDPTVVVVPDSVAPKELTVETTPVTTGYNDEFWEQYLK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4438 389 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
Mal4g4438 389 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal4g4438 389 Coils Coil 130 157 - -
Mal4g4438 389 Gene3D - 8 106 IPR036388 -
Mal4g4438 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 388 IPR027725 -
Mal4g4438 389 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4438 Mal-Chr4 122482020 122483805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4438 1 316 HSF AT4G18880 51.084 2.87e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal4g4438 HSF_DNA-bind 1.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4438 K09419 - gmx:100784280 431.024