Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4428 ATGGCTTTTCCAAATCAATCCATGTCAGATTCTCCACTGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAAAGGATTGAGAACACGACGAATCGACAAGTAACATTCTGCAAAAGAAGAAATGGTTTGCTGAAAAAAGCATATGAACTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGCAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAACAGGAAGCAGACAAACTGCGTGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGATCTCAAAAATCTGGAGACTAAATTAGAAAAAGGAATAAGCAGGATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAGAGGGAGATAGACTTGCACAATAACAATCAACTTCTGAGAGCAAAGATTGCTGAAAGTGAGAGGAACCATAATCACCATAGTAATCTTAATATGAGTATGTTACCTGGAGGCACAAACTATGAATCAATGCAGTCTCAGACTCAGCAGCAGCAGCATCAATATGAGTCTCGTGGATACTTTCAAGTGTCTGGATTACAATCCAGTAGCAGTCAAATGACTGCATTACAACCAAGTAGTCAGTTTGCAAGACAAGACCACATGTCCCTTCAATTAGTCTAA 789 0.3942 MAFPNQSMSDSPLRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIARYKKACSDSSGTGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHNHHSNLNMSMLPGGTNYESMQSQTQQQQHQYESRGYFQVSGLQSSSSQMTALQPSSQFARQDHMSLQLV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4428 262 MobiDBLite consensus disorder prediction 241 262 - -
Mal4g4428 262 PANTHER MADS BOX PROTEIN 10 245 - -
Mal4g4428 262 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mal4g4428 262 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Mal4g4428 262 PANTHER AGAMOUSB 10 245 - -
Mal4g4428 262 Coils Coil 102 129 - -
Mal4g4428 262 MobiDBLite consensus disorder prediction 204 226 - -
Mal4g4428 262 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g4428 262 Coils Coil 139 159 - -
Mal4g4428 262 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g4428 262 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Mal4g4428 262 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Mal4g4428 262 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4428 Mal-Chr4 122276070 122283815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4428 14 262 MADS-box Gene Family AT3G58780 64.400 4.41e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal4g4428 K-box 8.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4428 K09264 - gmx:732595 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4428 4 122276070 122283815 Mal4g4428 4 122276070 122283815 ECH
Mal7g4395 7 111486174 111491021 Mal4g4428 4 122276070 122283815 PCT