Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4324 ATGGAGCACTTTCCTCGCTCCACTCAACCTGATCCGTCTTCTGAATGGACCGGACCCGATTCTCAAACCGGTTTGGAAGAACCTATGTGGCAATTGGGGTTAGGTGGTGGCGATGATTCGTATCCACAACGACCTGATGAGGTTGATTGTACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGTGGCGCGGTTAATGGAGCTGCTTCTTGGACTGTTGGGGAGTATCCAGAACGTGTTGGCCAACCTGTGTGCCAGTACTATATGAGGACAAGATCTTGCAAATTCGGTGCGTCTTGCAAGTATCATCATCCGAAACAGACAGGAAGCACTGATGCTAGCCCTGTTTCCCTAAATTATTATGGATATCCATTACGTCCGGGTGAAAAGGAATGTTCCTATTTTGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTACAAATTCCAGCTCCATCACCGGTTCCGGCAGTTTCACCTTTACATGTACCGGTACCTTCCCCATTGTATCAAACCGTACAACCACCATCCGGACCTTCATCACAACAAATTGGTGTACTGGTCGCAAGGCCACCTCTACTACCTGGTTCGTTCGTCCAGAGCCCCTATGGACATGTGGTATTGTCCCCAACCATGGTCCCTTTTTCTGGATGGAGTCCTTATCAGGCAACTGCAACAAGCCCTGTACTTCCTCCTGGTACTCCAGCTAATGTTGGTTCCACACAGATTTATGGGATAACCCATCTACCTTCACCGAGTAATGCCTATACTGGGCCTTATCAACCTTCTGGTTCCTCAGTTGGTCCTTCAAGCAGAAGTCAGAATGATCAGTCATTTCCAGGAAGTCCTAATCAACCAGAGTATCATTATTACTCTAAACCAGAGGAGCTTTCATTTGGTCCATCGTATAGGTATCACAAACCACCAGACACGAATTCACCAAAAGTGAATGCTGTCCTTAGCCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACTTTGCACTCATTATACACAGCGTGGTATATGCAAGTTTGGTCCTGCATGCAAATTCGATCATCCTATTACACCACTGAGTTACAGTCCATCTGCCTCTTCCCTGAAAGATGTACCAGTTGCACCCTACTTTGTGGGTTCATCCGTTGGTACTCTTGTTCCTTCATCGTCTTCACCAGAGTTGCAGCCAGAACCGACCACAGGATCCAGCAGGGAGTCTGTTCCATCAAGAATATCTTCATCAATGAGCACATCAACTGGATCAGTTGGCTCGACTTTGCCAACTGGTGGCCCTGTTTCTCAATCAAGCACTCAAAGTTCTAGTCCTTTAGCAGCTGCCAATACCACAACAAGTAGCAATGTCTCTCACACCTCAAGTTAA 1440 0.4708 MEHFPRSTQPDPSSEWTGPDSQTGLEEPMWQLGLGGGDDSYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRGAVNGAASWTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPKQTGSTDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPAVSPLHVPVPSPLYQTVQPPSGPSSQQIGVLVARPPLLPGSFVQSPYGHVVLSPTMVPFSGWSPYQATATSPVLPPGTPANVGSTQIYGITHLPSPSNAYTGPYQPSGSSVGPSSRSQNDQSFPGSPNQPEYHYYSKPEELSFGPSYRYHKPPDTNSPKVNAVLSPAGLPLRPGAALCTHYTQRGICKFGPACKFDHPITPLSYSPSASSLKDVPVAPYFVGSSVGTLVPSSSSPELQPEPTTGSSRESVPSRISSSMSTSTGSVGSTLPTGGPVSQSSTQSSSPLAAANTTTSSNVSHTSS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4324 479 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Mal4g4324 479 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Mal4g4324 479 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Mal4g4324 479 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Mal4g4324 479 Gene3D - 38 119 - -
Mal4g4324 479 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Mal4g4324 479 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Mal4g4324 479 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Mal4g4324 479 MobiDBLite consensus disorder prediction 275 312 - -
Mal4g4324 479 Gene3D - 120 172 - -
Mal4g4324 479 SUPERFAMILY CCCH zinc finger 46 72 IPR036855 GO:0046872
Mal4g4324 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Mal4g4324 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 71 IPR000571 GO:0046872
Mal4g4324 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 375 IPR000571 GO:0046872
Mal4g4324 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 163 IPR000571 GO:0046872
Mal4g4324 479 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Mal4g4324 479 MobiDBLite consensus disorder prediction 1 41 - -
Mal4g4324 479 MobiDBLite consensus disorder prediction 275 306 - -
Mal4g4324 479 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Mal4g4324 479 MobiDBLite consensus disorder prediction 7 21 - -
Mal4g4324 479 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Mal4g4324 479 MobiDBLite consensus disorder prediction 405 479 - -
Mal4g4324 479 Gene3D - 350 404 - -
Mal4g4324 479 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Mal4g4324 479 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Mal4g4324 479 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4324 Mal-Chr4 120703289 120707142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4324 11 436 C2H2 Transcription Factor Family AT5G18550 53.499 4.33e-136 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal4g4324 zf-CCCH 5.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4324 - - gmx:100812433 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4324 4 120703289 120707142 Mal4g4324 4 120703289 120707142 ECH
Mal5g4792 5 121120298 121124423 Mal4g4324 4 120703289 120707142 PCT