Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4294 ATGGCTATAATCAGGAGTATGAGATCTCGATCTCAAAGGGTAGTTACGATGGCGGAGAAGGAAGAGAAAGTGGCGGTTGGCGACGGTTTACGGCAGAGTTGTTGGGCTAACATGCCACAAGAGCTTCTCCGGGAGGTTCTTCTCCGAATTGAAGCGTCGGAGGACACGTGGCCGCCGAGGAAGAACGTGGTTGCTTGTGCTGGAGTGTGTCGCAGTTGGAGAGTTATCACTAAAGAGATTGTTAAAAAACCTGAACTTTCCGCTATGATCACTTTCCCAATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTGCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACGTATTATTTGTTTCTCAGTTTAACTAGTTCGCTTGGTGATGATGGGAAGTTCCTTCTAGCTGCACGAAAATGCAGACGTCCTACCTGCACAGATTATATCATCTCTCTCGATGCAGATGATATGTCAAGGGGAAGCAACACCTATGTTGGTAAATTGAGATCGAATTTCCTCGGAACAAAGTTTACGATCTATGATGGCCAGCCACCTCATGCAGGAGCAAAATTTACTCAAAGCCGTTCTACTAGGTTGGTGAATCTGAAGCAGGTTTCACCCAAGGTCCCAACGGGAAACTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCTAGCAGGGGGCCGAGGAGAATGCATTGTGTCATGGATTCCATTCCATCCTCTTCAATCGAACCAGGAGGGGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCTTGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGGTAGAAAACTCTCTATCCGGACCCCTGGTTGGTGATAAAAAAGATGGTATGCTTGTGCTGAAAAACAAGGCTCCAAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCCTCGGTTAAAAACTTTCAGTTGGTGGCTTCCGCAGAAGATGGAACTGCTGGACCGGAACATGATAAGATTATTCTGCAATTTGGGAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATATCGGCGTTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1173 0.4544 MAIIRSMRSRSQRVVTMAEKEEKVAVGDGLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPELSAMITFPISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKFTQSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSNRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAEDGTAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4294 390 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 3 390 - -
Mal4g4294 390 Pfam Tub family 96 385 IPR000007 -
Mal4g4294 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Mal4g4294 390 Pfam F-box domain 35 84 IPR001810 GO:0005515
Mal4g4294 390 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Mal4g4294 390 Gene3D Tubby Protein; Chain A 93 390 IPR025659 -
Mal4g4294 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Mal4g4294 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Mal4g4294 390 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Mal4g4294 390 SUPERFAMILY Tubby C-terminal domain-like 84 390 IPR025659 -
Mal4g4294 390 PANTHER TUBBY-RELATED 3 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4294 Mal-Chr4 120291545 120294928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4294 8 390 TUB Transcription Factor Family AT2G47900 71.948 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal4g4294 Tub 9.4e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4294 K19600 - gmx:100778346 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4294 4 120291545 120294928 Mal4g4294 4 120291545 120294928 ECH