Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4285 ATGCAAGAACATCATCAACCATTAACCACTGATCTTGAAGCTCCCAAGATTTCCCACCAGACCGAGACCAGGCTAAACAAAGAAATTTCGGATAGTGGAGCTAACGGGAGGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTCTAGGGTTTGGCAGCACCGCTGGTGGAAAGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATCATATCATCACCAAAAGACTTTTTGCGGGCTTTGAGCTTCAAAAGAAAAGCGCATGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACCCTAAGGCAGCTGCAGAGAGTACTAGTATGGCCTCCATATCTGAAATTCCATGGTCAAGATGTAATTCTCTTCCTGTTTCCCATGCACCAAATCTTTCCCCTTCTGTTGCTACGCCGGTGTCTGCAAGGACATATAACGAACAACAGATTAAGCCACATAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTTCTATACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCATTGAACAGGAAAAAGAAGATACTAATGACGATCAAATAACTCCTGTGCCGGTTGAAGTTACTGAGGACGAAGAAATTCCTGAAGAGGCAGCAGTGTGCAGGATATGTCTTGATGATTGCGATGAAAGAAACACCTTTAAAATGGAATGCTATTGTAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCAGCACAAAAGGAAACAAGAAATGTGAAATATGTGGGAAAGAGGTTCAAAATTTACCGGTAACCTTACTCCGTGTATCCAGCTCTGTTCAACGAAGAAACAGACAGCTGCAGGATCATCAGAACTTAAATACAGAGACGATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTGCCTTTACATTGGGCCTCCTGGCATCTGTTTTTGCAGTCGTCCTTGCAATCAAAGAGTACATATGGACATACGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTGTTTTATACTTTGTTGCATTTGGCGCCCATTTACTCGATACTGCTGTCATCAATTTTGGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCCAGTATATGAATTGGAGATTTCAGGTCTCTGACAACCCAGTATGA 1272 0.4175 MQEHHQPLTTDLEAPKISHQTETRLNKEISDSGANGRRPDISLQVPPRPLGFGSTAGGKVLDHSQSFSKGIISSPKDFLRALSFKRKAHVADGERSSLLNSDPKAAAESTSMASISEIPWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDVKSKVSRSLSIPGRNVVIVRSVSFNTRIEQEKEDTNDDQITPVPVEVTEDEEIPEEAAVCRICLDDCDERNTFKMECYCKGDLRLVHEECLIKWFSTKGNKKCEICGKEVQNLPVTLLRVSSSVQRRNRQLQDHQNLNTETISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFAFTLGLLASVFAVVLAIKEYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSILGFGIAMGINYMYIQYMNWRFQVSDNPV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4285 423 SMART ringv_2 216 264 IPR011016 GO:0008270
Mal4g4285 423 Pfam RING-variant domain 217 263 IPR011016 GO:0008270
Mal4g4285 423 PANTHER ZINC FINGER PROTEIN 14 421 - -
Mal4g4285 423 MobiDBLite consensus disorder prediction 1 57 - -
Mal4g4285 423 ProSiteProfiles Zinc finger RING-CH-type profile. 209 270 IPR011016 GO:0008270
Mal4g4285 423 SUPERFAMILY RING/U-box 213 267 - -
Mal4g4285 423 CDD RING_CH-C4HC3_MARCH 217 264 - -
Mal4g4285 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 272 IPR013083 -
Mal4g4285 423 PANTHER OS02G0165000 PROTEIN 14 421 - -
Mal4g4285 423 MobiDBLite consensus disorder prediction 17 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4285 Mal-Chr4 120182390 120187491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4285 185 320 C3H Transcription Factor Family AT5G05830 28.481 4.65e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4285 - - gmx:100777100 633.639