Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4200 ATGGGTATTTCATGGAGTAGCAGTAGAAGAAGAAACAATTTCATTCAAAACCCACCTCCACAACCACCCCAACTTCCACCACCACCGCCACCACCACCTTACTATTACTCCTCAGAAGCACACCCTCCACCACCACCACCCCAGCAAGGTTACTACTATCCCCCCTCAACTACTCCTTACACCGCACAACCCACCGGCTATGCTAATCCTCCTCCTCCTCCTCCTCTACCTCAAACCCATTCTTCATTCTACTTCTCTAACCCTAATAATTCTTACACCAACTATCCCAATTCTACTACCAATCGCATTCAATATCATCCCAATCAGCAACAGCAATATGCCTGGCCCCCACCACCTCTTCCTCCTTTTTATGCTCCTGCTGCTTCCTCTTCCACCCCACCTCCATATGTTGATCATCAAACTGCTAAGAAAATTAGGAACAATGTTAATGTTCATAAAGACACTTTGCGCCTTGAGGTTGATCAGCATAACCCTGACCACCATCTTGTTTCTTTCGTTTTCGATGCCGTCTTTGATGGCAGCATTACTGTCTTCTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCGGGAACAGGGATAGACCTAGGCTTCTTTGATTTAGATGATCTTTCAAAGCCTTCACCTGGGGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGAAAACGAAACTCCTAAAACTCCTGATGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAAGTAACGGTGGGGGTGCTTTCCAGATTAAAGTAGTTAGACAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAACTCGGAAGCTGCAGGCTTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCGAAAGCTCTGCGGATTCAATCCAATAAATGCCCTATATGCCGTCAGCCAATTGAGGAACTTATGGAGATCAGGGTGAAGAGTAGCGATCCATGA 1179 0.4529 MGISWSSSRRRNNFIQNPPPQPPQLPPPPPPPPYYYSSEAHPPPPPPQQGYYYPPSTTPYTAQPTGYANPPPPPPLPQTHSSFYFSNPNNSYTNYPNSTTNRIQYHPNQQQQYAWPPPPLPPFYAPAASSSTPPPYVDHQTAKKIRNNVNVHKDTLRLEVDQHNPDHHLVSFVFDAVFDGSITVFYFAKEEDKCRFVPLFPDAFVPVKVPFEKGVGQKFAQPSGTGIDLGFFDLDDLSKPSPGEDVFPLVICAETCLETPSENETPKTPDDSLLDASPHMQITQAVLEKSNGGGAFQIKVVRQILWIDGVRYELRELYGIGNSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRIQSNKCPICRQPIEELMEIRVKSSDP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4200 392 SUPERFAMILY RING/U-box 336 383 - -
Mal4g4200 392 MobiDBLite consensus disorder prediction 1 15 - -
Mal4g4200 392 SMART ring_2 337 375 IPR001841 -
Mal4g4200 392 MobiDBLite consensus disorder prediction 65 79 - -
Mal4g4200 392 MobiDBLite consensus disorder prediction 1 97 - -
Mal4g4200 392 Pfam Zinc finger, C3HC4 type (RING finger) 335 381 - -
Mal4g4200 392 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 336 376 IPR045195 -
Mal4g4200 392 PIRSF SBP1_RNase_bind 47 171 IPR017066 -
Mal4g4200 392 PIRSF SBP1_RNase_bind 318 388 IPR017066 -
Mal4g4200 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 391 - -
Mal4g4200 392 MobiDBLite consensus disorder prediction 16 53 - -
Mal4g4200 392 MobiDBLite consensus disorder prediction 80 97 - -
Mal4g4200 392 ProSiteProfiles Zinc finger RING-type profile. 337 376 IPR001841 -
Mal4g4200 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 386 IPR013083 -
Mal4g4200 392 PANTHER MAHOGUNIN 1 391 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4200 Mal-Chr4 118775799 118780579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4200 34 391 C3H Transcription Factor Family AT3G06140 53.279 4.81e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4200 - - vra:106775674 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4200 4 118775799 118780579 Mal4g4200 4 118775799 118780579 ECH