Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4160 ATGGCAAATTTCACCTCCTTCACTTCATCCTCTTCTTCCACTCCTCCTCCTCCTCCTCCTCCTTCTTTCTCAGCTCCATCTTCATCTTCACCTTTCGATGATGACTCTTTTGAAGATTCTTGCAGTATTTGCTTGGAGTCCTTCAGTGTTCATGACCCATCTACTGTTACCTGTTGCAAACATGAATATCACTTGCATTGCATTCTCGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCCTGCCAAGAGCTTCTTGACGCTGTGGAGGCTGAAAAAAGCTTAAGATCAAGAAACAATCATTCATCTTCACTCACTAATTCTCGTGTCCCCTTTAGATATTCTAATGGTGATCATGATGATTCTTGCTCAGATGAAATTGATTTTGATGAGGAAATTATGCAGCACCTATATGCCGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAGAAGACAGGGATCGTCTGGAGCAGGTCCATCAGAGATTCTTGTTTTCAACTCTTCTGGGCGTGTATCTGGGATGCAACCAACACTTACAACTTCACCAGCTGGCGGTAGTTCACCGACCACTGATCTACCGTCAACTGTCAACGTTCATCCTGAGGTTGCAAGAAACACTAGTCCTGAGGCTGATGTTCCTTTTAGACCCAGAGTCCTTTACAGTCCATCACCACCTCAGGATGAGAGGAAACTAAATACTTCTGAGATGTTCTCCTTTCCCGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCTAAAAGTACTCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGCCACAGTGAAGGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCTGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGATCTTGCCTCAAAAAGGTCGGTTTCTCCTATAATTCCTGTCCGTAATGAGGGAACTTCAGGTTTTCCCAAAGGGATGTCTGTTGAAGAGAAAGGCATTGGGAATTCTCAAAATGAAGCAAGTGGAAGTGTTGCTCGTAATGTTAGTTCAGATGCCCCCTCAAACATTTCTAGCACTGTTGTTGCTGCTCGAATGGAAATTCCTCCATGTGTTCAGAGAGGACATGATGCTGTGAAGACTTAG 1179 0.4385 MANFTSFTSSSSSTPPPPPPPSFSAPSSSSPFDDDSFEDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSLRSRNNHSSSLTNSRVPFRYSNGDHDDSCSDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSGAGPSEILVFNSSGRVSGMQPTLTTSPAGGSSPTTDLPSTVNVHPEVARNTSPEADVPFRPRVLYSPSPPQDERKLNTSEMFSFPESFKSKFSAASARYKESISKSTRGLKEKLLARNATVKELSKGVQREMNAGIAGVSRMIERLDLASKRSVSPIIPVRNEGTSGFPKGMSVEEKGIGNSQNEASGSVARNVSSDAPSNISSTVVAARMEIPPCVQRGHDAVKT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4160 392 SUPERFAMILY RING/U-box 38 88 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 343 365 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 181 241 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 104 123 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 1 33 - -
Mal4g4160 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 113 IPR013083 -
Mal4g4160 392 MobiDBLite consensus disorder prediction 12 26 - -
Mal4g4160 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 372 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 181 213 - -
Mal4g4160 392 MobiDBLite consensus disorder prediction 108 123 - -
Mal4g4160 392 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Mal4g4160 392 Pfam Ring finger domain 39 81 IPR001841 -
Mal4g4160 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 372 - -
Mal4g4160 392 SMART ring_2 41 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4160 Mal-Chr4 118166676 118170307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4160 35 89 C3H Transcription Factor Family AT4G00335 47.273 2.42e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4160 K19043 - gmx:100785684 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4160 4 118166676 118170307 Mal4g4160 4 118166676 118170307 ECH