Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4139 ATGATGCAACCAGGACACGGCATGGCTCCTCCCACCATGGGTCAACAGCCACCGCAACAATACCAACAGCCGCCACCACAGCAGCCGTACGTCATGATGCCACCTCAGGCGGCGCCACCGGCCATGTGGGCGGCCCAATCCGCTCAGCCTCCTCAGCAGCCCACCAGCGCCGATGAGGTCCGTACTCTATGGATCGGTGATTTGCAGTACTGGATGGATGAGAATTATCTTTATACCTGCTTCGGTAACACCAACGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTGTTTCAGAAGGTTATGGATTTATTGAGTTTAATACTCGTGCTACTGCTGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCAAATGGTGGCCAGAGCTTCAGATTGAATTGGGCAACTTTCAGTGCCGGGGAGAGGTCGTCGAGACAGGATGATGGTCCTGATCATACCATTTTTGTTGGAGATTTGGCTGCGGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGTTCGTTATAACTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTCACTGGCAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTGCTTGTTCAACAAGACCCATGAGGATTGGACCAGCCACAAATAAGAACCCTGCTGCCACCACTCAGTCGAAAGCTTCATATAACCCTAGTGGCGGACAAAGCGAGAATGATCCAAATAACACAACTATTTTTGTTGGCAATTTGGATCCAAATGTCACCGATGATCACTTGAGGCAAGTTTTCATCCAATATGGTGAACTAGTGCATGTGAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTTCGGAGAGGAGCTGTGCAGAAGAGGCAATACGTGTTCTAAATGGAACATTATTGGGTGGACAAAATGTTCGCCTTTCATGGGGTCGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAAACCAGGGTGCTTACCCTGCTGCTGGTGGATATTATGGTTATGCACAGGGTGGTTATGAAAATTATGGTTATGCTCCTCCTCCTGCCGGACAGGATCCCAATGTGTATGGAAGTTATCCTGGGTATGCTGGTTACCAACACCCACAGCAGCACCAGCAACAAATGGGATATAGCTAA 1209 0.4806 MMQPGHGMAPPTMGQQPPQQYQQPPPQQPYVMMPPQAAPPAMWAAQSAQPPQQPTSADEVRTLWIGDLQYWMDENYLYTCFGNTNEVTSVKVIRNKQTSVSEGYGFIEFNTRATAERVLQTYNGTIMPNGGQSFRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRVRYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVACSTRPMRIGPATNKNPAATTQSKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFIQYGELVHVKIPSGKRCGFVQFSERSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPNQGAYPAAGGYYGYAQGGYENYGYAPPPAGQDPNVYGSYPGYAGYQHPQQHQQQMGYS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4139 402 CDD RRM2_SECp43_like 155 234 - -
Mal4g4139 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 334 IPR000504 GO:0003723
Mal4g4139 402 MobiDBLite consensus disorder prediction 17 36 - -
Mal4g4139 402 Gene3D - 141 243 IPR012677 -
Mal4g4139 402 Gene3D - 60 140 IPR012677 -
Mal4g4139 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 235 IPR000504 GO:0003723
Mal4g4139 402 Gene3D - 244 368 IPR012677 -
Mal4g4139 402 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 397 - -
Mal4g4139 402 CDD RRM1_SECp43_like 62 142 - -
Mal4g4139 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 397 - -
Mal4g4139 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 141 IPR000504 GO:0003723
Mal4g4139 402 MobiDBLite consensus disorder prediction 1 56 - -
Mal4g4139 402 MobiDBLite consensus disorder prediction 229 261 - -
Mal4g4139 402 MobiDBLite consensus disorder prediction 235 261 - -
Mal4g4139 402 SUPERFAMILY RNA-binding domain, RBD 147 244 IPR035979 GO:0003676
Mal4g4139 402 SMART rrm1_1 263 330 IPR000504 GO:0003723
Mal4g4139 402 SMART rrm1_1 157 231 IPR000504 GO:0003723
Mal4g4139 402 SMART rrm1_1 62 137 IPR000504 GO:0003723
Mal4g4139 402 SUPERFAMILY RNA-binding domain, RBD 26 143 IPR035979 GO:0003676
Mal4g4139 402 MobiDBLite consensus disorder prediction 368 402 - -
Mal4g4139 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 128 IPR000504 GO:0003723
Mal4g4139 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 220 IPR000504 GO:0003723
Mal4g4139 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 327 IPR000504 GO:0003723
Mal4g4139 402 CDD RRM3_NGR1_NAM8_like 261 332 - -
Mal4g4139 402 SUPERFAMILY RNA-binding domain, RBD 248 362 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4139 Mal-Chr4 117871956 117876875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4139 60 341 Eukaryotic Initiation Factors Gene Family AT2G23350 27.875 5.03e-28 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5479 5 129431526 129433493 Mal4g4139 4 117871956 117876875 PCT