Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4124 ATGGCAGTCACATTATATAACCTTAAGGCTAAATCTGGGTTGAAAAAGCTTGATGAGTACCTTCTCATGAACATTAACATCACCACAAGTAGAAGGAAAAAAGTGGCAGTCACATTCTATAACCTTAAGGCTGAATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCATGAACATTAACATCACCAGGGGTGGGAAGATACATGCTACAATTAGGAAGGAGTTGTTGTATCTATTTCAATCGAAAATTGTTGAGGGAGACGTGTACGAGATGTCTTTTTTCTCAGTTGCTCCGAGTTCAGGTTCATATCGTGCTACTCTTCATCCTTACAAGTTACTGTTTCAGATGAAGACAAAGGTTCAGAATTGCAAGAGTTCTTTTATCCCCAACTATGGATTATCTTTCACCAAGATTGCTGAGATTTGTAGTCACACTTCTGATTATGAATATTTAGTTGATGTTATTGGTCTTTTGACTGGCATTTCGGCGGAAAGAGAGTATATTAGGGATGGCAAAATCACTAAGATGATTGTTTTGGAGTTAACTGATGATAGTGGTAAAATTGAGTGTGCGTTGTTTGGTGATTATGTTGACACTTTGCAGAAGCTGATGGCTAAATCTGTTGGAGGAATACCGGTTGTTGTTATTCAGTATGCTAAGATTAAGACTTTTAGAGAGAAAGCATCCATTCAAAATGTCATGAACACTACTAGGATTTTAGTTAATCCAGACATTCAAGAGGTTGTTGATTTCAAGAATGGGTTAGTTATGTTCTTCTTATCAAATGGTGTTGAGCCCTCTGATTATGTCCCTACCCTTGGTCCGCGGGAAAGGCCTTCACTGGAAGAAGAATTTTTGCGCATGTACCCTAAAAAAACCATTGCAGGCCCGAAGGATATGGCTGAGGATGGAATATTTGTTGTGTCTGCTGTTGTAGAAGGAATGGTTGAAGGTGAGGAGTGGTGGTATCTTGCATGTAGGTGCCACCGAAGTGTTGTTCCTGATTCTGGGGCTTACTATTGCAAGGGTTGTGTCAAACATGTTTTCCACATGATTCCAAGGTACAAGGTTAAGCTTCATGTCGCTGACGGGATTGATGATGCAGTCTTCCTTCTGTTTGATAATGACATGAACAATCTTCTGTTATGA 1149 0.3969 MAVTLYNLKAKSGLKKLDEYLLMNINITTSRRKKVAVTFYNLKAESGLKKLDEYLLMNINITRGGKIHATIRKELLYLFQSKIVEGDVYEMSFFSVAPSSGSYRATLHPYKLLFQMKTKVQNCKSSFIPNYGLSFTKIAEICSHTSDYEYLVDVIGLLTGISAEREYIRDGKITKMIVLELTDDSGKIECALFGDYVDTLQKLMAKSVGGIPVVVIQYAKIKTFREKASIQNVMNTTRILVNPDIQEVVDFKNGLVMFFLSNGVEPSDYVPTLGPRERPSLEEEFLRMYPKKTIAGPKDMAEDGIFVVSAVVEGMVEGEEWWYLACRCHRSVVPDSGAYYCKGCVKHVFHMIPRYKVKLHVADGIDDAVFLLFDNDMNNLLL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4124 382 PANTHER REPLICATION FACTOR A 1, RFA1 71 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g4124 382 SUPERFAMILY Nucleic acid-binding proteins 302 380 IPR012340 -
Mal4g4124 382 Gene3D - 25 125 IPR012340 -
Mal4g4124 382 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 71 377 - -
Mal4g4124 382 Gene3D - 286 381 IPR012340 -
Mal4g4124 382 SUPERFAMILY Nucleic acid-binding proteins 64 123 IPR012340 -
Mal4g4124 382 CDD RPA1_DBD_B_like 153 252 - -
Mal4g4124 382 Pfam Replication factor-A C terminal domain 306 381 IPR013955 -
Mal4g4124 382 CDD RPA1_DBD_A_like 64 120 - -
Mal4g4124 382 SUPERFAMILY Nucleic acid-binding proteins 133 253 IPR012340 -
Mal4g4124 382 Gene3D - 128 256 IPR012340 -
Mal4g4124 382 Pfam Domain of unknown function DUF223 63 151 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4124 Mal-Chr4 117458959 117462720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4124 53 381 Core DNA Replication Machinery Family AT5G08020 20.870 2.17e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4124 - - mtr:MTR_8g062030 382.104