Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4103 ATGTCTGACAACGATAATCACGGTGCTTCTTCCCCTGACAAGCCAAGTTCCCGGGGATTTGGTAATGAGAGGATGAGAAGGAGAGATGGAGACAGGAAAACTTTTCATGATCACCGTGACCGTCACAGAGATGATAAGTATGAAGGTTTTAAAGGAAGAGGAAGATATGACGGTTATAATCGTCAACGTGGCCGCGATTATGATAGGCATAATGACTATGATCGAGACAGAGATACAAGAAACAGATACGGAGCACATTCGAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACACCCACTGTTTCAGGGCTAATGCCGGGGATTACTCATATGATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGGGTGTACGTTGGTGGGCTTCCTCCTTTTACTAATGAGCAGTCAATTGCATCTTTCTTTAGCCAAGTCATGCTTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCGGTTGTCAATGTCTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGAGTTCGTAGGCCAACTGACTATAACCCTTCGTTAGCTGCAACTCTAGGTCCCTGCCAGCCAAGTGCAAACCTTAACTTATCTGCTGTTGGACTTTCTGCAGGTACAATTGGCGGAGCCGAGGGACTTGATCGCATCTTTGTTGGTGGGCTTCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGAAACAGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTCAATGGTCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGCACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCTCAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCTACAAACGATGAAAGCCCCACTAAAGTTTTATGCTTAACTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCCGCAAATTTGGGACCTTGGTGAATGTTATTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTGCAGGAATTGGAAAGGTGTTCTTGGAATACTCTGACTGTACTGCTTGTTTAGCTGCAAAAAATGCTCTAGATGGTAGGAAATTTGGGGGTAATATTGTGACTGCTTTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1563 0.4299 MSDNDNHGASSPDKPSSRGFGNERMRRRDGDRKTFHDHRDRHRDDKYEGFKGRGRYDGYNRQRGRDYDRHNDYDRDRDTRNRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGLMPGITHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQSIASFFSQVMLAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAATLGPCQPSANLNLSAVGLSAGTIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVIIPRPNPNGELSAGIGKVFLEYSDCTACLAAKNALDGRKFGGNIVTAFYYPEEKYHSMEYDL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4103 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 256 IPR000504 GO:0003723
Mal4g4103 520 SMART rrm1_1 174 252 IPR000504 GO:0003723
Mal4g4103 520 SMART rrm1_1 294 367 IPR000504 GO:0003723
Mal4g4103 520 PANTHER RNA-BINDING PROTEIN 9 519 - -
Mal4g4103 520 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 21 518 IPR006529 GO:0003723|GO:0005634|GO:0006397
Mal4g4103 520 CDD RRM3_U2AF65 418 505 - -
Mal4g4103 520 CDD RRM1_U2AF65 172 254 - -
Mal4g4103 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Mal4g4103 520 CDD RRM2_U2AF65 293 369 - -
Mal4g4103 520 Gene3D - 287 389 IPR012677 -
Mal4g4103 520 Gene3D - 168 268 IPR012677 -
Mal4g4103 520 SUPERFAMILY RNA-binding domain, RBD 294 511 IPR035979 GO:0003676
Mal4g4103 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Mal4g4103 520 SUPERFAMILY RNA-binding domain, RBD 65 253 IPR035979 GO:0003676
Mal4g4103 520 MobiDBLite consensus disorder prediction 1 128 - -
Mal4g4103 520 MobiDBLite consensus disorder prediction 19 83 - -
Mal4g4103 520 MobiDBLite consensus disorder prediction 1 17 - -
Mal4g4103 520 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 9 519 - -
Mal4g4103 520 Gene3D - 414 519 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4103 Mal-Chr4 117041874 117051371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4103 287 369 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 2.77e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4103 K12837 - vvi:100243034 637.491