Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4085 ATGGCATTTCAGCATTGTTTTTCCCATGAACTAAAAACCATTCCAAATTCAATGTCAGAAGCAGAAAATCCCAACGGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCGAACGAACCGGTAGTCACACTTTGTGGTCACCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTAATGATTCTCTTGGATCTGATGAACACCCACAATGTCCTGTATGCAAAGACGATATATCACATACCACAATGATCCCATTGTATGGCCGCGGCGGCCACACTCCACCGAGTGCAAAATCATCCTGTTGTGATGATAATTTTGTACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAATAGCATCTCAAAGTGATCATCAGCAGCAGCTTCCGTATCGTAATCCTTATCAGGGTCAATATTTAAACTCTTCTTCATACCACCAACAAGAGGATAATGCTACTTCACAAATGCTTAATCTTGGTGCCTCTATGACCTCAGGTTCTCACCACCATCCTGTCGTTGGAATGTTTGGGGAGATGGTTTTTGCCGGAGTGTTCGGCAACCCGCCAAATTCATATCAGATGAATGGAAGTAATAGCTCTAGAGTGAGAAGGCAAGAGTTGCAGACTGATAAATTTCTGAACAGAATTTCAAATTTTCTATTTTGCTGCTTTCTTTTGTGTCTTATTGTCTTCTGA 714 0.423 MAFQHCFSHELKTIPNSMSEAENPNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSNDSLGSDEHPQCPVCKDDISHTTMIPLYGRGGHTPPSAKSSCCDDNFVPPRPTASGAQALLAIASQSDHQQQLPYRNPYQGQYLNSSSYHQQEDNATSQMLNLGASMTSGSHHHPVVGMFGEMVFAGVFGNPPNSYQMNGSNSSRVRRQELQTDKFLNRISNFLFCCFLLCLIVF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4085 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 237 - -
Mal4g4085 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 91 IPR013083 -
Mal4g4085 237 SMART ring_2 30 77 IPR001841 -
Mal4g4085 237 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Mal4g4085 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal4g4085 237 CDD RING-HC_AtRMA_like 28 78 - -
Mal4g4085 237 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Mal4g4085 237 SUPERFAMILY RING/U-box 24 90 - -
Mal4g4085 237 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4085 Mal-Chr4 116814735 116815448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4085 23 223 C3H Transcription Factor Family AT4G27470 40.376 2.57e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4085 K10666 - gmx:100807061 312.383