Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4075 ATGGCGGATGAAGAAGGCGGTTCAAGCAGAAAGCGAAAACCAACCCGAGGCCCCGACGCCACCGTACGCAGCCAAGCACTCGAGCTTCTCCGATCTCGCAGATCAAACGGTCCACGATCAACAACCACACCACAAATCAGACTCGAAAACCCTATCTACGACACAATCCCCGAGGAAGAGTACACCGCCTTAGTCGCCAGCCGCCGCGAACAATCCCGCTCTTTCATCGTCGATGACGACGGATTCGGTTACAACGATGAAGGCGAAGAAGAGGATTGGTCTAAAGCAGGTGTATCCCTCTCCGATGAAGATGAATCGGAGAAACCGAAACGGAAAAAGGCGAAAGACGGTTTGCAGAGTAAGCGTCCTTCTGCTTCTTCTTCTGCGGCGAAATTGTCTGCTGCTGATGCTATGATGGGTGGATCGAGAGTGTCGTCGATATTTACTTCGGCAGTTTTTAAGAAAAGTAGAGATGATAAGGTTTGTGAGAGTATTGTTGATGATGTTCTTAAGGAGTTTGCGCCGGCTCAGAATGATAAACTTAGCCGGAGAAAGGTTCGATTGAATTCGTCTTCTGTTGTTAATGATGCACGGATTAAGGCTAAAAATAAGCCTTCAGCTGTAGAAAATTTCGCGAAAATTGGAAATGGTGATAATGGATCTACGTTAGGGTTAGGGTTAGAGCAAAAGTGTGATGTTGAATTGAATGAGAGTTTGGGAAATGGTGTGGGAGGAATGGTGGTGGAAGATAATGATTTGCCGAGTAATGGGAATTTAGTGGAAGAGAAAGTGGCGAAGGTGAAAGACGAAGAAATGAAAGCTAAACCTGTTGTGAAAAAGGAGGGTTTTACTTTGAATGCGAAAGTTAGTGAAGAGGTGGTGGATCCGAAGTTGTGTGCTACGACTGGTTGGCAGGCGGCGAGGAGTGGTGGAGGTGGAGGTGGGGAGGTGAATGTTGCGGATTCGAATAATCAACAACAGTCTGAGTTCAATTTGGAGCCGGAGGGATCGTTGCCTTTTTATATACTTGATGCTTATGAGGAGTATTATGGAGCTAATATGGGTACTCTATATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCGGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCGATTCCAAGTCATCCTTTGCATTCCACCAATGAGATGATACAACTTGAGAAAGATGTTCAAGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTAGCTGATACAAAGAATGAGATAGCAAAACATCTAGTGGATCTGGGTGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGACCCGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAACAGTGCACTTGAGCTATTTCTGATTAAAAGAAAGATTAAGGGGCCATCATGGCTACAAGTTTCAAAGTTTTCTACCTGCTCAGCTTCCCAAAGGATTAGCTGGTGCAAATTTGAAGTGGTTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTCATCTTCCTCAAAAATCACTCTAGTGATTCCTCCTGTGGTTGTCACAGCAATAAACTTGAAGACAACCATAAATGAAAAACAGAACATAAATGAAATTGTATCTGCATCTCTTGTCAGTTGCAATATGGTTAAGATTGACACTCCTATGCTGGCTTCCGAGTGCAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGAGGGGAATATATTCCCAAGGGGATTTATTGAGAAGGTCACGGACATAAACGGAAAAGCTGGGTCAAATGTTCTGTGTACTGAAATCAGTGAAAGGGATTTGTTAGATCGTCTAATGTTAGAATTACACGAGATGGATAGTGACGTTCTTGTTGGACATAATATTTCTGGATTCGACCTCGATGTTCTTCTCCACAGATCTCAGGCTTGCAGAGTAGAAAGCAGCGCGTGGTCTAAACTGGGCCGTCTCAACCGTTCCAGGATGCCTAAGCTCGACAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATAATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACGTATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACCCACCTTGCAAAAACACAGCTAAGCCAGTCTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACTGCAGAATCCCTGCTGGAGCTAATTAAGTATGGTGAAACGGATGCACAGTTGTCTATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACACCAGTTGACTAATATAAGTGGCAATCTATGGGGTAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGTTGCACGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATTACACAAAAGAAACAAAATTGACGAAGCGCAGGGCAACTCATGGTGTCGATGATGGAAAATTTGACGATGCAGATATTAATGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAACAAAAAGTCTGCTTCTTATGCTGGAGGACTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATACATATTACTTCTGGACTTCAACAGTCTATACCCTTCCATCATTCAGGAATATAATATCTGCTTCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAAAAAGCTGGTTGAGTGGAGGCGGGACGTGAAGAAACGGATGAAGACTGCATCTGGTCTTAAACGTCAGCAACTGGATTTTGAGCAGAAAGCACTGAAGCTTACTGCAAACAGTCTGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCACTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGTGTGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTAAAGAGGTCAATAAGAAATACAGGTGCTTAGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGGTGTTAAGGTGCTGCAGTTTAAAGATGGCACCCCATATGTGGTTGATGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTGTTAGCGAAAGATTCAGGAGAATTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTAGCATTGGAAAAATACGTCATCACAAAGACATTGACTAAACCACCCGAAGCATACCGTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACGTCTGGTTGCTCTGCTGGCGATACAATCCGTTACGTAATTTGCTGCGAGCAGGGTGGTAGTTCAGGCGGTGCAACGGGAATTGCTCTACGTGCCAGACATCCGGATGAATTAAAACGAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGCCTCTGTGCATCAATTCAGGGCACAAGCCCTGAAAGACTGGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCATTAAGTGACGATCCTACAAGCTCACTCTTATTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGTCATTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCTGTGTTTAAATCTATTTGTATGTTGGGAAATGAAAAGCCAACCAGCTCAGGTGCGGAGGAACGTGACTACCATTTCTGGCGTAAGCTGTGCTGTCTAAAATGCTCTGAAAATGGTGTTGGTAGAATTACTCCTGCAATGATAGCTAATCAGGTCAAACAGCAAGCAGAGAAGTTTGTTTTAATGTATTACAGAGGTGTACTAATGTGTGATGATGAAACGTGTAAGCATACAACACGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCCCGCTGCAACGGGCATCTTAATAGAAAGTACACTGAAGCCGAATTGTACAAGCAGCTCTCATATTTTTGTCACGTGTTTGATACTGTTTGTTGTATAGAAAAGATGGAGGCAAAGTCTAGGATACTGATAGAGAAGGAGTTGATCAAAATTAGGCCAATAGTTGATCTTGCTGCATCAACAATACAAAAGATTTGGGACCGTTGTGCCTTTGGATGGGTGAAGTTCCCGGACTTTGTTACAATTTAA 4578 0.427 MADEEGGSSRKRKPTRGPDATVRSQALELLRSRRSNGPRSTTTPQIRLENPIYDTIPEEEYTALVASRREQSRSFIVDDDGFGYNDEGEEEDWSKAGVSLSDEDESEKPKRKKAKDGLQSKRPSASSSAAKLSAADAMMGGSRVSSIFTSAVFKKSRDDKVCESIVDDVLKEFAPAQNDKLSRRKVRLNSSSVVNDARIKAKNKPSAVENFAKIGNGDNGSTLGLGLEQKCDVELNESLGNGVGGMVVEDNDLPSNGNLVEEKVAKVKDEEMKAKPVVKKEGFTLNAKVSEEVVDPKLCATTGWQAARSGGGGGGEVNVADSNNQQQSEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGNLYRSCCVVVKNMQRCVYAIPSHPLHSTNEMIQLEKDVQESRISPADFHKKLQDAVADTKNEIAKHLVDLGVSTFSMAPVKRKYAFERPDIPAGENYVVKINYPFKDTALPVDLKGESFCALLGARNSALELFLIKRKIKGPSWLQVSKFSTCSASQRISWCKFEVVVDSPKDIRVSSSSSSKITLVIPPVVVTAINLKTTINEKQNINEIVSASLVSCNMVKIDTPMLASECKRPGMLTHFTVIRKLEGNIFPRGFIEKVTDINGKAGSNVLCTEISERDLLDRLMLELHEMDSDVLVGHNISGFDLDVLLHRSQACRVESSAWSKLGRLNRSRMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLSQSRKEVAPHEVPKMFQTAESLLELIKYGETDAQLSMELMFYLSVLPLTHQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYTKETKLTKRRATHGVDDGKFDDADINDANYHNDASESDHKKNKKSASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTTGVLPELLKKLVEWRRDVKKRMKTASGLKRQQLDFEQKALKLTANSLYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGCDDIAKATSISKKVIKEVNKKYRCLEIDLDGLYKRMLLLKKKKYAGVKVLQFKDGTPYVVDERKGLDIVRRDWSLLAKDSGEFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYRDAKNQPHVLVAQRLKQQGYTSGCSAGDTIRYVICCEQGGSSGGATGIALRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEALSDDPTSSLLFAGDDEERYRGCESLVLSCPSCSGTFDCPPVFKSICMLGNEKPTSSGAEERDYHFWRKLCCLKCSENGVGRITPAMIANQVKQQAEKFVLMYYRGVLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEAELYKQLSYFCHVFDTVCCIEKMEAKSRILIEKELIKIRPIVDLAASTIQKIWDRCAFGWVKFPDFVTI* 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4075 1525 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1523 - -
Mal4g4075 1525 MobiDBLite consensus disorder prediction 28 49 - -
Mal4g4075 1525 Gene3D Palm domain of DNA polymerase 883 1107 IPR023211 -
Mal4g4075 1525 MobiDBLite consensus disorder prediction 75 132 - -
Mal4g4075 1525 Pfam DNA Polymerase alpha zinc finger 1319 1519 IPR015088 GO:0003887|GO:0006260
Mal4g4075 1525 MobiDBLite consensus disorder prediction 1 18 - -
Mal4g4075 1525 CDD POLBc_alpha 890 1294 IPR045846 GO:0003887|GO:1902975
Mal4g4075 1525 SMART polmehr3 555 1057 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal4g4075 1525 TIGRFAM pol2: DNA polymerase (pol2) 336 1276 - -
Mal4g4075 1525 Gene3D - 340 539 - -
Mal4g4075 1525 Gene3D DNA Polymerase alpha, zinc finger 1318 1511 IPR038256 -
Mal4g4075 1525 SUPERFAMILY Ribonuclease H-like 335 843 IPR012337 -
Mal4g4075 1525 Pfam DNA polymerase alpha subunit p180 N terminal 27 93 IPR024647 -
Mal4g4075 1525 MobiDBLite consensus disorder prediction 88 114 - -
Mal4g4075 1525 SUPERFAMILY DNA/RNA polymerases 839 1293 IPR043502 -
Mal4g4075 1525 Coils Coil 1071 1091 - -
Mal4g4075 1525 Gene3D - 380 506 - -
Mal4g4075 1525 PRINTS DNA-directed DNA-polymerase family B signature 914 927 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal4g4075 1525 PRINTS DNA-directed DNA-polymerase family B signature 1043 1051 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal4g4075 1525 PRINTS DNA-directed DNA-polymerase family B signature 990 1002 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mal4g4075 1525 Gene3D - 1122 1308 IPR042087 -
Mal4g4075 1525 CDD DNA_polB_alpha_exo 555 806 - -
Mal4g4075 1525 ProSitePatterns DNA polymerase family B signature. 1045 1053 IPR017964 GO:0000166|GO:0003676
Mal4g4075 1525 MobiDBLite consensus disorder prediction 1 53 - -
Mal4g4075 1525 Pfam DNA polymerase family B, exonuclease domain 370 748 IPR006133 -
Mal4g4075 1525 Pfam DNA polymerase family B 814 1278 IPR006134 GO:0000166|GO:0003677
Mal4g4075 1525 Gene3D Helix hairpin bin 953 1004 - -
Mal4g4075 1525 Gene3D - 555 870 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4075 Mal-Chr4 116659509 116671611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4075 12 1523 Core DNA Replication Machinery Family AT5G67100 57.908 0.0 1743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4075 K02320 - gmx:100798779 2138.61