Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4063 ATGAACTCAATCAACCACAATCCATGGAATAAAGAAGCAATGTTTCAATTCTTTTTGCATGACTATTTGGTCAAAAAGGGAAAATATAACTCTGCTGAGATTTTGATGATCGAAGGAAACGTTCCGAATACTGATCCTATTGGCATGGAAAGTTTTGGTTCAATGCTTTATTCTCCGGAAGGATTACTGTATGAATGGTGGTCTGTTTTCTATGAGATATTTAAGTCTAGACTAAGGATACGTCAAGGGTCTGAGCCACAGCCCTCTACTAATCGGGTCCAAAGAATGACTGATGCTGCAAGGAATAATCCCTCTTTTAGATTTCCTCAAACACCAATGAATGAGCAGATACCTCAACAATTTCAAGCCAGCTCCAGCTCTAGCTCTAACAACGTGATGGAACATCCAGCTGCTCATTTGATACCTCCGAGACTGTACAATAATGATCATCTTGGAAATTTTGCTGAACCAATTGATCCACGATTGCTTGCTCTCATCAATGCAAACAACCCGAATTTCTACTTAGGGAGTTGTTCAATTCATCCTTCACAAGATGTAGGCCAGCAGGTCCAGAAGCAATTCTATAAGGATAGTGGAATTGGTATGCGTGTGGGGTCTCCTATACCTAGAAATCCTCCGGATGCAAGACAAAAAGCAGTGCTGCCTTTAGATGGACCTCATGTAACAAATAACTATGAAGCTTCAAATTTTGTGCCAATGACTGGATGGCCATTAAATGACCAGATGCTAACCTCCATTTTGCAAATGCCAAACTATGGACCGCAGCAGTGTGAAGTGTTGAACATACACAATCAGGACGCAATCCTTGCTCAAGCACTTACAAGTACCCCTAACAGTCAGACTTTCACAGCTCCTCAAAACTTCACCAGACGTAATAATCAATATCCAGAGATTCCCAAGACTGAATCAAGTAATAAGGATAGGGAGATGATGGACCAAACTGTTCGAGCTGGAGAACCTCAATTCAGGCAGGATCAGCAAATGCAGATGCATTCCCAAAATCTCGATATGATGGACCAAACTGTTAGAGCTGGAGAACCCCAATGCAAGCAGGATCAGCAAATGCAGATGCAGTCCCAAAATCTCGATAAGAGAAGAAAGAGAAAGATAACAGCACCTGTAGCACCTGGAGAATGTGTCCCGATAATGGACCAAACTGTTAGAGATGGAGAACCTCAATGCAAGCAGGATCAGCGATTGCAGATGCAGTCCCAAATTCTCGATCAGAGCAGAAAGAGAAAGATGACAGCACCCGTAGCACCTCAAGAATGTGTCCCGGACTGTGTGGATGCAGCAGGTGGAAAACCAGCAGATGAAATTGTGGATTCTTACCTGTCTATTGAAAATTCTGATGCTGATCATAGAACTATGTCTTTCAGCAATCTGAAACGATTATCAGGAAGAAATCAAAATAAAGGTTTTTCACTCAAAGAGGTTGGAAGCCTTCGCTTGAGCAAAAGCAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAAATTTTGGCAAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAACGTGGAAAATTTTCAAAGTTATGCTTCTGAAGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCACAGTCAACTATATTTGCGACATCTTCCTTTGATAGATCTGTAAGACTATGGGATACAACCAGACCCACCAAATCATTGTTCAAACTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCTAGAAAGGTGGACATTCTTTGCTCGTGTGATAACAATGATATAATTCGACTCTGGAATGTGAACAAACGTTCTTGTCTGCGTGTTACTAAGGGAGGTAGTAAACAAGTTAGATTTCAGCCTCTTCATGGGAAGCTTCTAGCGACTGCTACCGGAAATAATCTTAAAATAATTGATGTTGAAACTGATAAAGATGTGTGCAATCTAAAGGGACATGATAAAGATGTTGTTTCCATTTGTTGGGATAGAATGGGACAGTATATTGCCTCTGTCAGTGAAGATAGAGCACGAGTCTGGTCGGACGGAGAATGCATCGGCGAGTTGCTTTCAAATGGGAACAAGTTTCAATCGTGCATATTTCATCCGGCATATAATAACCTATTAGTTATTGGTGGCTATCAGTCCCTTGAATTCTGGTCTCCAACTGACGAGAGCAGTAGAACAGTGTCAGTTTCTGCACACGAGGGGTTAATTGCTGGACTAGCAGATTCACCCAAAGATGAATTGATTGCCTCGGCTAGCCATGATTGTTTCGTGAAACTATGGAAATAA 2313 0.4146 MNSINHNPWNKEAMFQFFLHDYLVKKGKYNSAEILMIEGNVPNTDPIGMESFGSMLYSPEGLLYEWWSVFYEIFKSRLRIRQGSEPQPSTNRVQRMTDAARNNPSFRFPQTPMNEQIPQQFQASSSSSSNNVMEHPAAHLIPPRLYNNDHLGNFAEPIDPRLLALINANNPNFYLGSCSIHPSQDVGQQVQKQFYKDSGIGMRVGSPIPRNPPDARQKAVLPLDGPHVTNNYEASNFVPMTGWPLNDQMLTSILQMPNYGPQQCEVLNIHNQDAILAQALTSTPNSQTFTAPQNFTRRNNQYPEIPKTESSNKDREMMDQTVRAGEPQFRQDQQMQMHSQNLDMMDQTVRAGEPQCKQDQQMQMQSQNLDKRRKRKITAPVAPGECVPIMDQTVRDGEPQCKQDQRLQMQSQILDQSRKRKMTAPVAPQECVPDCVDAAGGKPADEIVDSYLSIENSDADHRTMSFSNLKRLSGRNQNKGFSLKEVGSLRLSKSKVLASHFSSNGKILASAGHDKKVFIWNVENFQSYASEETHSLLITDVRFRPQSTIFATSSFDRSVRLWDTTRPTKSLFKLSGHSEQVMSLDFHPRKVDILCSCDNNDIIRLWNVNKRSCLRVTKGGSKQVRFQPLHGKLLATATGNNLKIIDVETDKDVCNLKGHDKDVVSICWDRMGQYIASVSEDRARVWSDGECIGELLSNGNKFQSCIFHPAYNNLLVIGGYQSLEFWSPTDESSRTVSVSAHEGLIAGLADSPKDELIASASHDCFVKLWK* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 530 IPR001680 GO:0005515
Mal4g4063 770 CDD WD40 485 770 - -
Mal4g4063 770 SMART WD40_4 610 646 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 688 727 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 649 687 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 567 607 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 729 770 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 482 521 IPR001680 GO:0005515
Mal4g4063 770 SMART WD40_4 524 563 IPR001680 GO:0005515
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 524 - -
Mal4g4063 770 ProSitePatterns Trp-Asp (WD) repeats signature. 508 522 IPR019775 -
Mal4g4063 770 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 616 IPR001680 GO:0005515
Mal4g4063 770 Gene3D - 624 770 IPR015943 GO:0005515
Mal4g4063 770 Gene3D - 448 623 IPR015943 GO:0005515
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 563 IPR001680 GO:0005515
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 770 IPR001680 GO:0005515
Mal4g4063 770 MobiDBLite consensus disorder prediction 285 307 - -
Mal4g4063 770 ProSitePatterns Trp-Asp (WD) repeats signature. 594 608 IPR019775 -
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 738 770 - -
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 563 - -
Mal4g4063 770 Pfam WD domain, G-beta repeat 570 607 IPR001680 GO:0005515
Mal4g4063 770 Pfam WD domain, G-beta repeat 497 521 IPR001680 GO:0005515
Mal4g4063 770 Pfam WD domain, G-beta repeat 655 686 IPR001680 GO:0005515
Mal4g4063 770 Pfam WD domain, G-beta repeat 737 770 IPR001680 GO:0005515
Mal4g4063 770 Pfam WD domain, G-beta repeat 533 563 IPR001680 GO:0005515
Mal4g4063 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Mal4g4063 770 MobiDBLite consensus disorder prediction 285 321 - -
Mal4g4063 770 SUPERFAMILY WD40 repeat-like 483 770 IPR036322 GO:0005515
Mal4g4063 770 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 770 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4063 Mal-Chr4 116370133 116377141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4063 568 769 Miscellaneous Gene Families AT5G08390 26.066 3.64e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal4g4063 WD40 0.06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4063 - - gsj:114387334 533.102