Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4055 ATGGATGGAAATTGGGGTGAGGGAAAGAGAATCTATGAGTACAAAGAAGAAAATGAGTATGAAATAGAAGAAGAAGAAGATTATGGAGATGATGGGAAGAAGAAAAGGGTGAATGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCATGTCAAGTTGATAACTGTAATGCTGATCTAAGTGTTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCAAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGGAGGCGTTTGGCTGGACATAATGAAAGGCGTCGCAAAAGTGCTTCTGATCAATACAATTGA 414 0.3937 MDGNWGEGKRIYEYKEENEYEIEEEEDYGDDGKKKRVNDHLYNKKGSKAGGSVTPSCQVDNCNADLSVAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHEVSEFDDLKRSCRRRLAGHNERRRKSASDQYN* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4055 137 Pfam SBP domain 57 130 IPR004333 GO:0003677
Mal4g4055 137 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 133 - -
Mal4g4055 137 MobiDBLite consensus disorder prediction 20 54 - -
Mal4g4055 137 MobiDBLite consensus disorder prediction 118 137 - -
Mal4g4055 137 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Mal4g4055 137 SUPERFAMILY SBT domain 55 134 IPR036893 GO:0003677|GO:0005634
Mal4g4055 137 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 133 IPR044817 GO:0003677
Mal4g4055 137 PIRSF SBP 4 137 IPR017238 GO:0003677|GO:0003700|GO:0009908
Mal4g4055 137 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4055 Mal-Chr4 116238354 116240383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4055 41 134 SBP-box Gene Family AT2G33810 68.085 2.65e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal4g4055 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4055 - - gmx:100782285 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4055 4 116238354 116240383 Mal4g4055 4 116238354 116240383 ECH
Mal4g4055 4 116238354 116240383 Mal7g3535 7 100471819 100474787 ECH
Mal4g1465 4 22329628 22332109 Mal4g4055 4 116238354 116240383 ECH