Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4050 ATGCCAAATTCAGATTCTTCGGTTGAAGATGATGATCCTTCACTTCAAGAAGAAGATGACGAAGAAGAAGAATTTGAAGAAGTAGAAGAGGAGGAAGAAGAAGAAGAAGAAGATCAAGAACAGGAACAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGTTGAAGAAGAAGAAGAGGTGGAAGTTGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGCAAGTAGAAACAGTGGAGGTGGAAGATGATGATGAGGAGGAGGAGGAGGAAGAGGATGATGAAGAAGAAGCAATAGTAGAAGATAAACATATTCAAGAAACAATAAAGGTAGAGGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAATAGAGATGGAAGAGGAAAAACAAGAAACAATAGTAGATGAGAAAGATAAATACAAAGATGAGGTTCCAGATTCTCTTCCCGATGCAGACAAACATAGCAAAGAAACAGTAGAGATGGAAGACGAGGAGGAGGAGGAAGATGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGCAATAGAGATGAAAGAGGAGGAAAAACAAGAAACAGTAGTAGAGGAGAAAGATAAAGACACAGATGAGGTTCCAGATTCTCTTCACGATGCAGATAAACATAGCAAAGATTCAAGCCAACATATGGGGCTTGATAGGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCCAAGAACCCTGAAGTAATACGGCCATCACATGATATGGAGGAGAATGATGCCATGATTAAAGCATCTGTTTCGTCGCATGAGGAATTTACATTGAACAATGACGAGTTCCCCCTGAAACAAGAAGTTTCTAGTCCTCCAAAACCACATGAAAACTTGATTTCTGCTGAAGATGGGAATAATCAAGGCCCAAACATTAATGTCGAAAATTCTGAACATCTTCAGAGGAAAACCTTTGGAGGATGCAGTGAACCAGATAGCAATAGCAAAGCTTCTTTATCTGATGTTACGGGAAAAGATGTGGTTACTGGAATCGTACCGAGAGATAATTTTGTTGAGGATGCTGATGGTGGTCAGAACTCTAAGGAGAAAATTATGCAGTCTGAGATGGAGTCAAGGGTTGATGTGAAACAAAAGCCATCAAGTAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAAAGACCTGCAATTATATGTGATTTTTTTGCTAAAGGTTGGTGCATCCGAGGTAGCTCTTGTAGCTTCCTTCATGTAAAAGATAGTGTGAATAATGCTGACCAGGGGGTTGAAGGAGACTTGGTTACTGCACATCAGAAGAGAGAATTGAAATTGGGAAAAGGTGTTAAGGAAACTGTTGACAGGTCAAGAACGAATGAGGAAGAAGCAAGTCCAAGTTGGCATCCATCTCATGAAAAAGAAAAGTTTCCGATGAGGGACAGCTTGTTTCCAGAGAATAAATCTGCATTTAATACATCAAACAATTATTTCAGCTCAAATCTTTCCTCATATTCATCCCGTGGAGAGGAAATGATTGCTATTCGAAACCAACATATGTACAGAGGATATACATCGACAAAAGATTTTAGTTCACCTTTAGGTGCAAGTGCTTTGGACTCTCACGTCCATAAATCCTCTTTCTCTTCAGATCGGGAAGATTTTCATCTAGTTGGTTCATCTAGGGTTCCACCACATGCTAATGGATATAATCTAAAAACCCGTTCTAATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCTATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCAAATATTGGAGATGGGTCTCTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGGTTCGGACATATGATGATTCTGCTGCAATTGGGAAACACATGTCCGATCTTAATGATGAAAAAAGTTCTGTATCTTCCCATAATAAGTTTTATGAAAATGAGCCAAACAGAAGGTCTGTTCCTCGCGGACAAGATTGTCTTGCAACCAAAGCAGAGATAGCATCCGGAACTTGTGCAAACTACGAAAATGGTGACATAGGTATTGGACAATATGCCTTTGGTGCTGAAGATAGGATGGAAACAGTGAAAAAACGGTCTGAGCATGATGCTAGGCATCATAGTGATGGATCAGAGCACAAAAAAATGAGAGTAGCGAAGGATAATTTTCAGGAAATGGAGGTTGACTTTCAGACAGATGGCAGTGTACTCAAAGAAACAAAGGCACTGAAAATTTTCCGTGCAGTTCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGACGCACATATATTGATAGTTAAAAAATCAGTTGACAAGGTTATTAGCACTTTAGAGCCACACCAAATTCCGACTACTGAAGATACTGCTAAGCAGTATGTTTCTTTATGTCGGCCGAAAATTGCAAAGTTAGTCCAGGGATATGTCAACAAACATGGCAAATCATGA 2619 0.4013 MPNSDSSVEDDDPSLQEEDDEEEEFEEVEEEEEEEEEDQEQEQEEEEEEEEEEVEEEEEVEVEEEEEEEEEEQVETVEVEDDDEEEEEEEDDEEEAIVEDKHIQETIKVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEIEMEEEKQETIVDEKDKYKDEVPDSLPDADKHSKETVEMEDEEEEEDEEEEEEEKEEAIEMKEEEKQETVVEEKDKDTDEVPDSLHDADKHSKDSSQHMGLDRKEENLGPVSSVPKNPEVIRPSHDMEENDAMIKASVSSHEEFTLNNDEFPLKQEVSSPPKPHENLISAEDGNNQGPNINVENSEHLQRKTFGGCSEPDSNSKASLSDVTGKDVVTGIVPRDNFVEDADGGQNSKEKIMQSEMESRVDVKQKPSSRTRSLSPSAEIKDGNKRPAIICDFFAKGWCIRGSSCSFLHVKDSVNNADQGVEGDLVTAHQKRELKLGKGVKETVDRSRTNEEEASPSWHPSHEKEKFPMRDSLFPENKSAFNTSNNYFSSNLSSYSSRGEEMIAIRNQHMYRGYTSTKDFSSPLGASALDSHVHKSSFSSDREDFHLVGSSRVPPHANGYNLKTRSNWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQVRTYDDSAAIGKHMSDLNDEKSSVSSHNKFYENEPNRRSVPRGQDCLATKAEIASGTCANYENGDIGIGQYAFGAEDRMETVKKRSEHDARHHSDGSEHKKMRVAKDNFQEMEVDFQTDGSVLKETKALKIFRAVLVDLVKELLKPFWHEGRLSKDAHILIVKKSVDKVISTLEPHQIPTTEDTAKQYVSLCRPKIAKLVQGYVNKHGKS* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4050 872 Coils Coil 179 222 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 1 276 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 479 503 - -
Mal4g4050 872 Coils Coil 14 87 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 158 188 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 679 704 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 391 418 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 189 209 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 679 701 - -
Mal4g4050 872 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 36 872 - -
Mal4g4050 872 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 447 IPR000571 GO:0046872
Mal4g4050 872 ProSiteProfiles Zinc finger C3H1-type profile. 422 449 IPR000571 GO:0046872
Mal4g4050 872 MobiDBLite consensus disorder prediction 210 255 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 302 359 - -
Mal4g4050 872 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 36 872 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 10 98 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 319 359 - -
Mal4g4050 872 SUPERFAMILY CCCH zinc finger 422 446 IPR036855 GO:0046872
Mal4g4050 872 Coils Coil 100 171 - -
Mal4g4050 872 MobiDBLite consensus disorder prediction 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4050 Mal-Chr4 116202780 116209110 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal4g4050 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4050 - - cam:101503101 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4050 4 116202780 116209110 Mal4g4050 4 116202780 116209110 ECH