Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4046 ATGGCTTCTTCATCTTCGAATCGTGAAGGTCACTACAGAGGTGTTAGGAAGCGTCCATGGGGACGCTACGCTGCTGAGATTCGCGATCCGTGGAAGAAGACACGTGTTTGGTTGGGTACATTTGATACTCCTGAAGAAGCTGCTCTTGCTTACGACGGCGCCGCTCGTTCTCTCCGTGGAGCCAAAGCAAAAACTAACTTTCCTCCGGCGCCGGTTCCCGGCGGGATTTGCTTGGATCTCAACGCTCCTTCCTCTGATCTCCGTTGGCCATCTATTCCGTCGCGTGGCCGTGTGCTCACTGAGTTTCTTCAAACTGGTGTTCTGAAAGATTTCAACGCTCCTCCACCTCCACCCATGGGTTCGGTGGTTGGACAAAGGAATAATGAAGTTACTCTCGCCGTCGCCGGCAGAACTATGGTGGCTGAGAACTCTCCTACGGCGGCTTATTTGGGACTTGTTCGACGTGGGATTCCGATTGATCTGAATGAGCCTCCGCCGGTGTGGCTTTGA 510 0.5353 MASSSSNREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVPGGICLDLNAPSSDLRWPSIPSRGRVLTEFLQTGVLKDFNAPPPPPMGSVVGQRNNEVTLAVAGRTMVAENSPTAAYLGLVRRGIPIDLNEPPPVWL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4046 169 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Mal4g4046 169 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Mal4g4046 169 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Mal4g4046 169 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 159 - -
Mal4g4046 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 5 159 - -
Mal4g4046 169 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Mal4g4046 169 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Mal4g4046 169 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Mal4g4046 169 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Mal4g4046 169 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4046 Mal-Chr4 116139630 116140139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4046 1 169 AP2-EREBP Transcription Factor Family AT1G28360 46.569 1.18e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal4g4046 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4046 - - cam:101504196 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4046 4 116139630 116140139 Mal4g4046 4 116139630 116140139 ECH