Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4045 ATGGCGCCGAAAGTTAAAAACGGTGGCGTTAACGTGAACAATAACGGAAACGTTAACGGCGGCGGCGTTAAGGAGGCGCATTTTAGAGGAGTAAGAAAGAGACCATGGGGAAGATACGCCGCCGAGATAAGAGATCCAGGAAAGAAAAGCCGCGTTTGGCTCGGAACCTTCGACACGGCGGAGGAAGCGGCGAGAGCTTACGACGCCGCCGCACGTGAATTCCGCGGTCCAAAGGCGAAAACAAACTTCCCCTTCCCTATTCAGAGTCCTAGCCAAAGCAGCACCGTTGAATCCTCCAGCCGTGACCGTGATCGTGACGGCGCCGCCGCTGATTCTTTACCGCTTGATCTCAACTTAGCTCCTGCTTTCCAGCACCGGTTAACTCCGATGCCGGTGGTTAACCAGGCGTTTTGTTTCGACGCTGTTTTACGCGCCGGGATGGTGAATTCACGTCCTTGTTATGGTTATGGATTTGAATATAATCCTCTTAAGGAGGCGATTGGATTCCACGCGACGATTGGTGCGCAGAGTGATTCAGATTCTTCTTCGGTGATTGATCTGAACCACCATGGTAGAAGCTTCGATCTCGATCTTAACTACCCTCCGTTGGAAGATATGCAATAA 624 0.516 MAPKVKNGGVNVNNNGNVNGGGVKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPFPIQSPSQSSTVESSSRDRDRDGAAADSLPLDLNLAPAFQHRLTPMPVVNQAFCFDAVLRAGMVNSRPCYGYGFEYNPLKEAIGFHATIGAQSDSDSSSVIDLNHHGRSFDLDLNYPPLEDMQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4045 207 MobiDBLite consensus disorder prediction 1 24 - -
Mal4g4045 207 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Mal4g4045 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 132 192 - -
Mal4g4045 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 88 - -
Mal4g4045 207 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mal4g4045 207 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Mal4g4045 207 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Mal4g4045 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 132 192 - -
Mal4g4045 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 88 - -
Mal4g4045 207 MobiDBLite consensus disorder prediction 79 109 - -
Mal4g4045 207 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mal4g4045 207 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Mal4g4045 207 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mal4g4045 207 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4045 Mal-Chr4 116105125 116105748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4045 1 206 AP2-EREBP Transcription Factor Family AT5G44210 42.922 5.58e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal4g4045 AP2 1.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g4045 4 116105125 116105748 Mal4g4045 4 116105125 116105748 ECH
Mal4g1475 4 22567892 22568524 Mal4g4045 4 116105125 116105748 ECH
Mal7g2998 7 93313310 93314008 Mal4g4045 4 116105125 116105748 ECH