Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3994 ATGCAGCCTATATCCGCAAATGGAATTTCTCATGCTGGCATTGATAGCTCTCAGGTTGTGCAGTATGCAGCACCTCCACAGCTTGGCACTGGGCATGCTATGGTTCCGCCTGCTTATCCATATCCGGATCCCTACTACAGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCGCCGCAACCCTACGGGGGACATCCAATGGCCAATCTTCAGTTAATGGGAATTCAGCATGCAGGTGTTCCTTTGCCAACTGATGCAGTTGAAGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATTTTAAGACGCAGGCAGTCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTACTAGGAATCGGAAGCCATACTTGCACGAATCGCGGCATTTGCATGCACTGAAAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGGATCAGCTGACAATTCACATTCCAGTATCAATCTCAATTCTGATAGAAATGATCTTGCACAATCTGATAAACAACCTTGA 555 0.4523 MQPISANGISHAGIDSSQVVQYAAPPQLGTGHAMVPPAYPYPDPYYRSIFAPYDAQPYPPQPYGGHPMANLQLMGIQHAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENQQDEVGSADNSHSSINLNSDRNDLAQSDKQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3994 184 Gene3D - 88 149 - -
Mal4g3994 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 3 167 - -
Mal4g3994 184 MobiDBLite consensus disorder prediction 142 184 - -
Mal4g3994 184 MobiDBLite consensus disorder prediction 144 158 - -
Mal4g3994 184 SMART cbf3 87 148 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 90 145 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 PRINTS CCAAT-binding transcription factor subunit B signature 122 145 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 PRINTS CCAAT-binding transcription factor subunit B signature 91 113 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 MobiDBLite consensus disorder prediction 159 178 - -
Mal4g3994 184 ProSiteProfiles NF-YA/HAP2 family profile. 88 148 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 ProSitePatterns NF-YA/HAP2 subunit signature. 93 113 IPR018362 GO:0003677|GO:0016602
Mal4g3994 184 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 167 IPR001289 GO:0003700|GO:0006355
Mal4g3994 184 MobiDBLite consensus disorder prediction 106 122 - -
Mal4g3994 184 MobiDBLite consensus disorder prediction 105 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3994 Mal-Chr4 115176464 115178252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3994 29 180 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.842 1.86e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mal4g3994 CBFB_NFYA 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3994 K08064 - gmx:100809036 301.982