Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3928 ATGGAAGAAGAGAATAGAGAAATGAAGTTATTTAAGGATTTGGGTTTATCTGATCAATTAGTGGAAACTTGTGAAAAAATTGGGTGGAAGAATCCATTTGAGATTCAAACAAAAGTGATTCCACATGCACTACAAGGAAAAGATGTGATTGGAATTTCCGATACGGGTTCCGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCACGCCTTCTTAGAAGCACCACAGCCACACCTAAACAATGTTTTTGCTTGTGTATTGTCTCCCACAAGAGAGCTTGCCATTCAAATTGCTGAAGTGTTTGGAGCTCTAGGTTCTGATATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTAGCATGGTACAACAATCCAACGACATAGCAAAGCGACCTCATATTATTGTTGGAACGCTTGGACGAGTCTTGGATCACCTAAAAACCACCAAAGGATTTTCTCTTGGTAGACTAAAATACTTGGTCTTAGATGAGGCAGACAAGCTGTTGAACGAGGAATTTGAGAAACAACTTAATGTTATATTAGGATTGATTCCTACTAACCGGAGAACACTTCTTTTTTCAGCTACAAGGACAGATAAGGTCCGTAAGATCCGAAAAATGTGTTTAAGGGATCCCGTGAAGATCGAAGTATCAACCAAATATTCTACTGTGGACAGACTGGAGCAGCAGTGTTGCTTTGTGCCAGCAAAATATAAGAATTGCTACCTTGTATACATTCTCACTGAAATGACTGGAAGTACATCAATGGTATTCACTCGGACTTGTGATTCATCGCGACTTCTGGCTTTGACTCTTCGGAATCTTGGTTTCAAAGCCATCTCAATTTATGGTCATATGAGTCAGCATAAGAGACTTGAAGCCTTGAACAAGTTCAAGTCTGGGAAGTGCAATATTGTCCTTTGTACCGACGTACTTAGTAGGGGACTGGATATTGAAGCAGTAGATATGGTGATTAACTATGACATTCCAAGAGATCCTAAAAATTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGCTCTGGTGTTGCCATTTCCCTTTTGAACCAATATGAATTGTCGTGGTTCAGAAATATAGAAGAACATATGGACAAGAAGCTGCCATTGTATCCTGCAGAACGTGACGAAGTTTTGCTTTTGAAAGAGCGTGTTGATACGGCTAAAAGATTAGCAGAAAAGGAAATTAAGGAATCCGGTGAAAAGAAGAAATGGAGGGGCGAAGGAGACTTAGGTGAGGAGGATGAGGATATTGACAAGTACTTGGGTCTCTTTTCGTCAAGAAAAAAAAAGTACTCCGATCTCAATGATAAAAAATCGTCCAAGAAATTTAGAAGATAA 1362 0.4016 MEEENREMKLFKDLGLSDQLVETCEKIGWKNPFEIQTKVIPHALQGKDVIGISDTGSGKTGAFVLPILHAFLEAPQPHLNNVFACVLSPTRELAIQIAEVFGALGSDIGVKCAVLVGGTSMVQQSNDIAKRPHIIVGTLGRVLDHLKTTKGFSLGRLKYLVLDEADKLLNEEFEKQLNVILGLIPTNRRTLLFSATRTDKVRKIRKMCLRDPVKIEVSTKYSTVDRLEQQCCFVPAKYKNCYLVYILTEMTGSTSMVFTRTCDSSRLLALTLRNLGFKAISIYGHMSQHKRLEALNKFKSGKCNIVLCTDVLSRGLDIEAVDMVINYDIPRDPKNYIHRVGRTARAGRSGVAISLLNQYELSWFRNIEEHMDKKLPLYPAERDEVLLLKERVDTAKRLAEKEIKESGEKKKWRGEGDLGEEDEDIDKYLGLFSSRKKKYSDLNDKKSSKKFRR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3928 453 PANTHER RNA HELICASE 2 429 - -
Mal4g3928 453 Gene3D - 1 218 IPR027417 -
Mal4g3928 453 SMART helicmild6 266 347 IPR001650 -
Mal4g3928 453 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Mal4g3928 453 Gene3D - 219 451 IPR027417 -
Mal4g3928 453 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 386 IPR001650 -
Mal4g3928 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 368 IPR027417 -
Mal4g3928 453 SMART ultradead3 28 230 IPR014001 -
Mal4g3928 453 Pfam Helicase conserved C-terminal domain 242 347 IPR001650 -
Mal4g3928 453 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Mal4g3928 453 Pfam DEAD/DEAH box helicase 34 203 IPR011545 GO:0003676|GO:0005524
Mal4g3928 453 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Mal4g3928 453 PANTHER BNAC02G41920D PROTEIN 2 429 - -
Mal4g3928 453 CDD SF2_C_DEAD 227 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3928 Mal-Chr4 113917734 113923633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3928 11 379 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 1.02e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3928 K14777 - gmx:100775796 622.083