Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3911 ATGGGTGTTCCTAAGCAAAAGTGGTCCGAAGAAGAGGAAGCCGCACTTAAAGCTGGAGTGATCAAGCATGGGGTTGGTAAATGGCGCACGATACTCAAGGATCCTGAGTTCAACCATGTTTTATATCTTCGCTCAAATGTTGATCTCAAGGATAAATGGAGAAATTTGAGCGTGATGGCGAATACATGGACTTCAAAGGGAGCAATCAAAAGGGTGCATCATCATGCACCAAGACAGGAGGACAACTCTATGGCCGTCACTCCTCTTACTCCAAGTGATGACGAAATTGTTGATGTTCAACCTCTTCAAGTTTCAAGAGATATGATGCAGATTCCTGGCCCAAAAAGGTCTAGTATAAGATTGGATAACCTTATTATGGAAGCAATCTCTAGCTTGAATGAACGTGGTGGTTCTAATAAAACAACCATTGCTTCTTTTATTGAGGACCAATACTGGCCACCGGCTGACTTCAAAAAGCTGTTGTCAGCAAAACTGAAGCATCTTACATCTCATGGAAAACTGATCAAGGTGAATCGCAGGTATAGGATTGCACCTACTCCAGTATATTCAGACAGAGGAAGACACCCACCCATGTTATTAATGGAAGGGAGGCAGAAAGCCTCTATGAAATTTGACAGGGATGAGATCAATAATCCAATGAAGTATGACCTAGATTTAGAATTAGAGAAAATAAGGTCCATGTCTGCACAAGAGGCAGCTGCATATGCTGCTCGAGCACTTGCTGAAGCGGAAGCCCTCATGGTGGAAGCCGAAGAGGCAACAAAGGAGGCTGAGGCTGCAGAGGCAGAGGCAGATGCAGAGGAAGCTTGGGTAGAAGCTGAAGAGAAAAGACTGAAGAAGAGAAAAACCCAAAGACGATGA 882 0.441 MGVPKQKWSEEEEAALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMANTWTSKGAIKRVHHHAPRQEDNSMAVTPLTPSDDEIVDVQPLQVSRDMMQIPGPKRSSIRLDNLIMEAISSLNERGGSNKTTIASFIEDQYWPPADFKKLLSAKLKHLTSHGKLIKVNRRYRIAPTPVYSDRGRHPPMLLMEGRQKASMKFDRDEINNPMKYDLDLELEKIRSMSAQEAAAYAARALAEAEALMVEAEEATKEAEAAEAEADAEEAWVEAEEKRLKKRKTQRR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3911 293 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g3911 293 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g3911 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mal4g3911 293 Gene3D - 115 191 IPR036388 -
Mal4g3911 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g3911 293 SUPERFAMILY "Winged helix" DNA-binding domain 115 194 IPR036390 -
Mal4g3911 293 Gene3D - 3 59 - -
Mal4g3911 293 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Mal4g3911 293 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Mal4g3911 293 SMART sant 4 59 IPR001005 -
Mal4g3911 293 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 291 - -
Mal4g3911 293 Coils Coil 243 284 - -
Mal4g3911 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mal4g3911 293 MobiDBLite consensus disorder prediction 260 293 - -
Mal4g3911 293 CDD SANT_TRF 6 56 - -
Mal4g3911 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3911 Mal-Chr4 113660470 113668151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3911 1 237 Single Myb Histone (SMH) Gene Family AT1G49950 55.466 8.57e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal4g3911 Linker_histone 7.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3911 K09422 - gmx:100780698 345.125