Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3868 ATGAAATCACATGATGGATCATGGGGCGAGGATGTTATACGTGATGTGATTCTCAGAGCAGATACTATAGTTCAGACTATATTTCCTAATGGAACCATTCCAAGATTTCAAACACTCATGTTATACTATGAAATATTGGTAAATGTGTACCGAGCCAAGAAGAAGAAGAAGCCCAAAACATTGCGTGCAATACTAACTTGTGACATCTTCCATAGATGTTTGCTTGCATGTGCTGCTGCCGAACAAGTAACTCACACCAGCGGCACTGCATCGAAGCTGTTCCCTACTGATCGTGTATTGAACAGCTCTGGAATTACTGCTTTTGATCTTAGTCACACCATCACCACAAGTTCCGTTAGACATGAACGCTCTTTCCCCGGATACTTCAATCGAGATCTCAATTCATTCAAACTACAACTTTTGGAGAGCATAGCATGGAAAAAGGGTTCCTCATTGTTTAATTCTTTGTCACTTGTTAGACCTTCCCTTTCACCAGAAATCAACCGTCTTGGACTGTTAATGCCGCCATCATTCCATGAAACTAAGCTCGACCTGGAGACTACTTCCCCAAGTAAAGCATGTGCAGAAACTAAGCTCAACATATTTTTCCGCGAGATCAGTATGTTGGGAGCAGTCAGAATACACGGCATGGATGAAAGGCTAATATTATCTCAGAGGACAAGGGAGAACCGTTCAAAAATGAACATAAGTTTTACGGAGATTATACACAGCTACAAACAGCAACCAGAATGCAGACCATGCGTTTTTCTTAGTGTATTTGTTGATTGCCCAGTGGCAGGCCATGATGATGATGGGCCATTTGCAAGTAAGACAGGACAGGAGCACGTTGGCATTATTACATTTTACAATGACATATTCATTCCATCTGTATGGCCACTGGTTTTGGAACTTGACACTGATGGGGCAACTGTAAAAAGTGACCAATTAGCTGAAGTTGACAATACAAAGGATGGTCATCTAGCTCAATGTCTTGGGTCTCCTACAATAGTACCTTTCCCAAGATTTCCTGTTATGGATAGGGAAAAACTACATCCCACAAAAAATTTACGTGTCTTTCCATTATCATCATCCGAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGCTGAAAAGCTAGAATTATCTCAGCAGAAGACAGAGAAGAATGTAGGGGAGAATAACCTATCTTTTAAAGAGATTATAGCCAGCTATAGAATGCAACTGCAGTGCACACCACCAGTTTTTCATAGTGAATTTGTTGATTGGCCATTGGCACGCCTAGACTGGCCATATGGAAAAACAATAGTACATGCACATATCACTAGCATTGCTAAATATTACAATGATATATTCTTTCCCTATGTAAAGCCACTGCTGTTGGAACTTCCCGGTGGTGTGACAACTGCGGGGAGTTACAAAATAGCTGAATTCAATAGCAAAAATGACGACCATCTAGCTCAATGTCCCGAGCCTCCTTTGCCAAGCATTCCTGTTATGTCTGTGGAAGAAGTGTCTGCCACACACTATGCATGTGTCTCTCCAATGGGATCATCTGAGATCATTATGGTGGGTGCAGTCAGAATTAGGAGCATGGTTGAAATGCTTAGGTTATCTCAGCAGATAAGGGAGAATGTATACCGTCTGTTCGAGAGTATCCTACATGAACAGACATCTCTCTTCTTCAACCGTCATATTGACCACATCATTTTGTGTTGCTTCTGTGCAGTTGCAAAGATTTCAAAACTGAGCCTGACTTTTAAGGAGATTATAAGCAGCTATAAGAAACAACCACAGTGCAACCCGCGAGTTTTTGATCGTGTATTTGTTGATTGGTCATTGGCATGCCCGGACTCAGCATTTGGTAAAAGAATAGGACAGGAGCATGTTGACATTGTTACATTCTGCAATCAGATATTCATTCCCTCTGTTGAGCCACTGCTTTTGGAACTGGGCGCTGAAGCGGCAACTTGA 1977 0.4173 MKSHDGSWGEDVIRDVILRADTIVQTIFPNGTIPRFQTLMLYYEILVNVYRAKKKKKPKTLRAILTCDIFHRCLLACAAAEQVTHTSGTASKLFPTDRVLNSSGITAFDLSHTITTSSVRHERSFPGYFNRDLNSFKLQLLESIAWKKGSSLFNSLSLVRPSLSPEINRLGLLMPPSFHETKLDLETTSPSKACAETKLNIFFREISMLGAVRIHGMDERLILSQRTRENRSKMNISFTEIIHSYKQQPECRPCVFLSVFVDCPVAGHDDDGPFASKTGQEHVGIITFYNDIFIPSVWPLVLELDTDGATVKSDQLAEVDNTKDGHLAQCLGSPTIVPFPRFPVMDREKLHPTKNLRVFPLSSSEIIMLGAVRINGMAEKLELSQQKTEKNVGENNLSFKEIIASYRMQLQCTPPVFHSEFVDWPLARLDWPYGKTIVHAHITSIAKYYNDIFFPYVKPLLLELPGGVTTAGSYKIAEFNSKNDDHLAQCPEPPLPSIPVMSVEEVSATHYACVSPMGSSEIIMVGAVRIRSMVEMLRLSQQIRENVYRLFESILHEQTSLFFNRHIDHIILCCFCAVAKISKLSLTFKEIISSYKKQPQCNPRVFDRVFVDWSLACPDSAFGKRIGQEHVDIVTFCNQIFIPSVEPLLLELGAEAAT* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN 232 365 - -
Mal4g3868 658 Pfam Retinoblastoma-associated protein A domain 38 156 IPR002720 GO:0005634|GO:0051726
Mal4g3868 658 SUPERFAMILY Cyclin-like 521 652 IPR036915 -
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN 395 521 - -
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN 526 656 - -
Mal4g3868 658 SUPERFAMILY Cyclin-like 197 308 IPR036915 -
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 395 521 IPR028309 GO:0006357|GO:0051726
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 526 656 IPR028309 GO:0006357|GO:0051726
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 232 365 IPR028309 GO:0006357|GO:0051726
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN 10 229 - -
Mal4g3868 658 SMART RB_A_2 2 156 IPR002720 GO:0005634|GO:0051726
Mal4g3868 658 SUPERFAMILY Cyclin-like 364 463 IPR036915 -
Mal4g3868 658 Gene3D - 34 146 - -
Mal4g3868 658 Pfam Retinoblastoma-associated protein B domain 233 297 IPR002719 GO:0005634|GO:0051726
Mal4g3868 658 Pfam Retinoblastoma-associated protein B domain 522 645 IPR002719 GO:0005634|GO:0051726
Mal4g3868 658 Gene3D - 230 323 - -
Mal4g3868 658 Gene3D - 508 658 - -
Mal4g3868 658 Gene3D - 387 497 - -
Mal4g3868 658 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 10 229 IPR028309 GO:0006357|GO:0051726
Mal4g3868 658 SUPERFAMILY Cyclin-like 5 157 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3868 Mal-Chr4 112621809 112624980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3868 520 653 Core Cell Cycle Gene Families AT3G12280 60.448 1.08e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mal4g3868 RB_B 1.6e-30 CL0065