Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3841 ATGGTTGATAACTTTGGAGGTAGTTCCTCTAATGATAATGGTGGTATCAAGGAACAAGACAGGTTGCTACCAATAGCCAATGTTGGTCGTCTCATGAAACAGATTTTGCCTCAGAATGCAAAAATCTCGAAGGAAGCAAAGGAAACAATGCAAGAATGTGTGAGTGAGTTCATAAGCTTCGTTACGAGCGAAGCTTCGGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGATATTTGTTGGGCTTTAGCAACACTTGGTTTTGATGATTATGCTGAGCCAATGAGAAGGTACTTGCATAGGTATAGAGAGTTAGAAGTTGATAAAATTAATACTAATAATCAAGAAATTAGAGGAGGAAATCTTCAAGAGAAAGATGAACTTTATAGAGTAAATTTTAATTTTGAACTAAATTTGCATACAAAATATTGGTACCCAACAAAATTTGTGAGTATTAAAAAAAATTCCAAACATTATGTTGGACCTTATACTGATACCCAGCATAATGGTGAACATTATGTTGTATTCTCCAAAATATCATTCACTCATAGAAATAATAGAGATTATTATAAAATAACATCTAAATTAATTCGAAGTGTTTTAGGAATGATATAA 624 0.3301 MVDNFGGSSSNDNGGIKEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKINTNNQEIRGGNLQEKDELYRVNFNFELNLHTKYWYPTKFVSIKKNSKHYVGPYTDTQHNGEHYVVFSKISFTHRNNRDYYKITSKLIRSVLGMI* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3841 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal4g3841 207 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal4g3841 207 Gene3D Histone, subunit A 10 136 IPR009072 GO:0046982
Mal4g3841 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 128 - -
Mal4g3841 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Mal4g3841 207 SUPERFAMILY Histone-fold 19 130 IPR009072 GO:0046982
Mal4g3841 207 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Mal4g3841 207 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Mal4g3841 207 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3841 Mal-Chr4 112194996 112198069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3841 4 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.667 1.04e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal4g3841 CBFD_NFYB_HMF 7.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3841 K08065 - gmx:100794513 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4807 5 121279602 121281339 Mal4g3841 4 112194996 112198069 PCT