Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3840 ATGGATCATGTAAGGGATGTGAGTAGTGTTGTGGGGACTGTGATGATTCCGATGCGGTTTGTGTGGCCATATGGTGGAAGTACTGTTTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTGCCAATGTCTCCAGTGGAAGGCTGTCCAACAGTGTTTCAAGTGATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGAGGCATGATGAGCATCAACCTTATGTACATGGACAATATGGGATAGTCAACACTGTCTTGTTGGCAACTGATCCTAACTACATACCTGTTATAACTTCAGACATGGCTTCTGGAAATAACATGGATGTGGATAATGAGACTTTTCGCCGCATGGCCTGGGTGACAGATGGTGGTACATTGAGTGAGGTGCTTCCAAGAATATCAGATACTGATATACAGATCTCTCGTCAGCGTATTTCTGCGTTTCTGTCTATGCACACAGCTTATGAATTAGTTCCTGAGTCAGGCAAGCTTGTTGCTTTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATACTCCATGAGCAGGGAATATACATGGCTCCTCTCTGGGACACGTGCACAGGGCAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTGTTTTAATTTTAAGGGAGTTGGGGAGTCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAAAGGACATGGAACTGCATTCTCTAGACATCTTATCCATGCAGGACCATATGATAATCTGAAAGATATTGCCTTGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCTTTTCCGCAGTTACTGCATCTTGCTTCACTCTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGCATTGCTCTGGTACATTGCCTATACTACAACTTCCAATCTGTGCAATACCTGTGGGCACATGGGTGCCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAGTGTTGAGACCTAGCTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGCAAGTTCAATACCAATCGTTGATGATAATGACTCCTTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACACATCAATCTTGATGAAATGACTGTTCAACAGGCTTTGCAGTTGGGCCAGGATGCATGTAGTCCCTACGAGCTTAGAAGTCAAAGATGCCAGATGTGTTTGCGTTCTGATTCACTGCATAAAGTGATTGAGCGTTTGGCAAATCCAGGTGTCAGACGGATTGTTATCGTGGAAGCTGGCAGCAAACGTTTAGAAGGCATTGTCTCATTGAGTGATGTATTCAAGTTCTTTCTCGGTTAG 1461 0.4292 MDHVRDVSSVVGTVMIPMRFVWPYGGSTVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVITSDMASGNNMDVDNETFRRMAWVTDGGTLSEVLPRISDTDIQISRQRISAFLSMHTAYELVPESGKLVALDVDLPVKQAFHILHEQGIYMAPLWDTCTGQFVGVLSALDFVLILRELGSRGSNLTEEELETHTISAWKEGKSYLNRQNKGHGTAFSRHLIHAGPYDNLKDIALKILQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSGTLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGQDACSPYELRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDVFKFFLG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3840 486 Gene3D - 143 326 IPR046342 -
Mal4g3840 486 SUPERFAMILY CBS-domain pair 153 323 IPR046342 -
Mal4g3840 486 Pfam CBS domain 352 399 IPR000644 -
Mal4g3840 486 Pfam CBS domain 439 485 IPR000644 -
Mal4g3840 486 ProSiteProfiles CBS domain profile. 166 232 IPR000644 -
Mal4g3840 486 SUPERFAMILY CBS-domain pair 350 485 IPR046342 -
Mal4g3840 486 ProSiteProfiles CBS domain profile. 350 407 IPR000644 -
Mal4g3840 486 SUPERFAMILY E set domains 16 97 IPR014756 -
Mal4g3840 486 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 10 486 - -
Mal4g3840 486 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 10 486 - -
Mal4g3840 486 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Mal4g3840 486 Gene3D - 342 486 IPR046342 -
Mal4g3840 486 Gene3D Immunoglobulins 13 96 IPR013783 -
Mal4g3840 486 CDD E_set_AMPKbeta_like_N 17 95 - -
Mal4g3840 486 SMART cbs_1 354 402 IPR000644 -
Mal4g3840 486 SMART cbs_1 436 485 IPR000644 -
Mal4g3840 486 SMART cbs_1 172 221 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3840 Mal-Chr4 112184303 112193333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3840 12 124 Protein tyrosine phosphatase (PTP) family AT3G01510 29.508 1.48e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3840 - - gmx:100781819 843.573