Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3833 ATGGAGTCCTCACCACATAAACGCTCTGCTCCGACTGGAATTTCATCTGAAGAAGGATGCAAAAAGCTTAAACTATCGAGTGATGTTGCAGATTTAACACATGGTGATGTTGTAGATTACAAAAATCCGTATGCAATTTCAAATGTTATAAATCGTTTAGAGAGTAGAAAATTTGGAAGTGTGACAAAGAATATTAAAGCCCTTATGACCCAAAAAATGCAAATATTGGGCCCTTACTTTGAAAAATATCCTAGTCTTGTTAATCATCTATTGAGAGCGGTGACGGATCATGATGAAGAAACTCCTAACGTGGAAAATAGTAACGTTACTGGTATGTCACATCAAAATGTCATCAATTTGGATTCGGATGAGGAGCACACCGAAAATGATGTTTTGGCACCAAAAGGAGAAAATGATGTTCCTGCAGCACCATTTATCATTGATTCAGATGAGGAAGATGATAGGGATCATGATCATGATACTGTTCCAACAGATCATGATGAAGAAACTCCCTACATGGAAAATGAAAAAGTTGCTGCTATGTCCTATCAAAATGTTATCATTGATTCAAATGAGGAAGATTATAGGGATCAAAAAGAGGATGTTTTGGCACCAAAAAGAGAAAATTATGTTCCTGCAGCAGCACCATTTCATGAAGTCATTATCATCGATTCAGATGAGGAAGATGAGAGGGATCATGATGAAGAAACTCCCAAGATGGAAAATGAAGAAGTTGCTGGTATGCCCTATCAAAATGTTATCATTGATTCAAATGAGGAAGATGATAGGGATCAAACGTCTTTTCTTCCGTTTCATGAAGTTGTATTGCCGAAACCAGTTCAGTCTCCTGCATTAAAAATGATTGGATATCATGCTCCCACTGCTTACCATGGAGGAGAAAGTGAAGATCTAAAACTTGAAACAAGTCTGCCTCCTAAAGATAACACAAAGAAAGACAAAGGTAATTATGTTGCAGTACATGAGGAAGAAGATAATACAGAATTTGAAACAAGTCTGCCTCCTGAAGATAACACAAAGAAAGACAAAGGTGTTTATGTTGGTGTACATGAGGAAGAAGATACTAAGGTTGATACTGAAGATGACGGGCTAGAAGATGTTTGGAGGGAGATGGCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCATCCACCCGAAGAGGAAAAAGAGGACGACTGTGATCATTCTTTTGTTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAAAGCAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAATCATGGAATGCCAAAGAAGAAGCTGATATATTTGAAGTTAAGATTGCTAAAGATGATCTCATGGTAACGGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGGGACCATCCTGGGGGATGCATTTTGGCTCATGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCATGCAGAGTTTTCTAGGAAAGTATCCCGATGCACGACCTCTGGTGGTGCTTCCTAAGGGGATACTGTCGACTTGGAAAAGGGAGTTTCAGACATGGCAAGTGGAAGATGTACCACTTTATGATTTTTACAGTGTGAAAGCTGACAGTAGATCACAACAATTGAAAGTCTTAAAACAGTGGGTGGATAACAAGAGTATCCTTTTCTTAGGATACCAACAGTTTTCTTCTATTATCTGCGATAACTGTAATAGCAATGCATCAATATCTTGCCAAGATATACTGCTTAAGAATCCCTCAATTCTCATTTTAGACGAGGGACACACTCCTAGGAACGAGAATACTGATATGGTACAGTCCCTTGCAAAAGTACAAACACCAAGAAAAGTTGTCCTGTCCGGAACTCTATATCAAAATCGTGTCAAGGAGGTATTTAGCGTGCTTAACCTTGTCCGCCCAAAGTTTATGCAGATGGAGATGTCTAAACCTATTGTCCGACGCATTAAGAGTAGGATCCATTTACCTGGTGTGAATGACTTCTGTCATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACCAGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTTGATTTTACTGTGGTGCTCAATCTTACTGCCAGACAGAAGCATGAAGTTAAGACAATAAACAGGAAATTTAGAAAGTTCAAGATGTCTTCTGTAGGTAGTGCAGTATATCTGCACCCAGAGTTGAAACCAATTGCTGAGAAATTTGGTGAAAGTTCAATATCTGATCCTACAATAGATGATCTAATAGCAAACCAAGATGCGAGAGACGGGGTGAAATTAAAATTCTTTCACAATATGCTGAACCTATGCCAATCAGCTGGGGAGAAGCTTTTGGTGTTTAGTCAATATCTCTTGCCTCTGAAATATTTGGAAAGGTTAGCTATGAAATGGAAGGGCTGGAGTCTTGGCAAAGAAATTTTTGTAATTTCAGGAGAATCATCCACTGAACAAAGGGAGTTCTCCATGGAAAAATTCAACAATTCACCTGAGGCCAAAATCTTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCATTGGTTGGGGCCTCCCGTGTCATCATCTTAGATGTGCACCTCAACCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGACCAGGCCAGAAAAGGAAAGTGTTTGTGTATCGATTGATAGCTGCAGATTCTCCAGAAGAGGAAGATCACAGTACTTGTTTCGAGAAGGAATTAATTTCAAAATTGTGGTTTGAATGGAATGCATATTGTGGTGACAGAGCTTTTGAACTTGAGACAGTTGATGTGAAGGAATGTGGAGATATGTTTCTAGAAAGTCCATTGTTAGCGGAAGATGTAAAAGCTCTGTATAAAAGATGA 3036 0.3923 MESSPHKRSAPTGISSEEGCKKLKLSSDVADLTHGDVVDYKNPYAISNVINRLESRKFGSVTKNIKALMTQKMQILGPYFEKYPSLVNHLLRAVTDHDEETPNVENSNVTGMSHQNVINLDSDEEHTENDVLAPKGENDVPAAPFIIDSDEEDDRDHDHDTVPTDHDEETPYMENEKVAAMSYQNVIIDSNEEDYRDQKEDVLAPKRENYVPAAAPFHEVIIIDSDEEDERDHDEETPKMENEEVAGMPYQNVIIDSNEEDDRDQTSFLPFHEVVLPKPVQSPALKMIGYHAPTAYHGGESEDLKLETSLPPKDNTKKDKGNYVAVHEEEDNTEFETSLPPEDNTKKDKGVYVGVHEEEDTKVDTEDDGLEDVWREMAMAIETSKDVSADHPPEEEKEDDCDHSFVLKDDLGYVCRVCGVIDKAIETIFEFQYKVKRSTRTYMSESWNAKEEADIFEVKIAKDDLMVTEISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILSTWKREFQTWQVEDVPLYDFYSVKADSRSQQLKVLKQWVDNKSILFLGYQQFSSIICDNCNSNASISCQDILLKNPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNRVKEVFSVLNLVRPKFMQMEMSKPIVRRIKSRIHLPGVNDFCHLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTARQKHEVKTINRKFRKFKMSSVGSAVYLHPELKPIAEKFGESSISDPTIDDLIANQDARDGVKLKFFHNMLNLCQSAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSTEQREFSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHSTCFEKELISKLWFEWNAYCGDRAFELETVDVKECGDMFLESPLLAEDVKALYKR* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3833 1011 MobiDBLite consensus disorder prediction 299 348 - -
Mal4g3833 1011 MobiDBLite consensus disorder prediction 148 169 - -
Mal4g3833 1011 Gene3D - 447 692 IPR038718 -
Mal4g3833 1011 SMART ultradead3 476 686 IPR014001 -
Mal4g3833 1011 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 16 1011 IPR044567 GO:0080188
Mal4g3833 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 673 IPR014001 -
Mal4g3833 1011 SMART helicmild6 850 935 IPR001650 -
Mal4g3833 1011 MobiDBLite consensus disorder prediction 123 169 - -
Mal4g3833 1011 PANTHER PROTEIN CHROMATIN REMODELING 35 16 1011 - -
Mal4g3833 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 694 IPR027417 -
Mal4g3833 1011 Pfam Helicase conserved C-terminal domain 822 934 IPR001650 -
Mal4g3833 1011 Pfam SNF2-related domain 500 770 IPR000330 GO:0005524|GO:0140658
Mal4g3833 1011 CDD SF2_C_SNF 818 946 - -
Mal4g3833 1011 Gene3D - 743 997 IPR027417 -
Mal4g3833 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 971 IPR027417 -
Mal4g3833 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 821 989 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3833 Mal-Chr4 111992327 112001745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3833 832 953 RAD5 or RAD16-like Gene Family AT5G43530 39.344 3.82e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal4g3833 SNF2_N 7.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3833 K10875 - gmx:100795356 1214.13