Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3792 ATGGCTTCATCAAGTAGAGTAAGAAAAACAGAACCAAATACATCATCCTCAATTTCACAACATCACCAACTTCAAATCACAACTACAACAATAAAAGAAACTGAAGAAAACAACACCACCACCCCCAACAACAAATCATCAACATCAATGAAAAAAGCAATAGCACAATACACAGAAGACGCGCGACTCCACGCTGTATTCGAACAATCCGGCGAATCATTCGATTACACCCAATCCATCCGCCTTACAACAGCAGCCCATTCTCAATCCGTCCCTGAACAACAGATCACTGCTTACTTATCCAGAATCCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCAGTTGATGAACCTTCTTTTCGTGTTCTCGCTTATAGCGAGAACGCACGTGATATGCTTGGTATAACTCCTCAATCGGTACCTTCACTCGAGGACGATGACTCATCATCGTCCTCGGGTTTTAATATAGGTACCGATGTTCGTACTCTTTTTACTCATTCCAGTGCTGTTTTGCTTGAGAAAGCTTTCGCTGCTCGAGAGATTAGTCTCATGAATCCTATTTGGATTCATTCTAGATCTACTGGGAAGCCTTTTTATGGAATTCTTCATAGGATTGATGTTGGTGTTGTCATTGATTTGGAACCTGCTAGATCTGAGGATCCTGCTCTTTCCATTGCTGGCGCGGTACAGTCTCAGAAATTGGCGGTTAGGGCGATTTCTCAGCTGCAGTCACTTCCTGGTGGTGATGTGAAGGCTCTTTGTGATGCTGTTGTTGAGAGTGTTAGAGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCGTATATCGGTTTGCATTATCCAGCTACTGATATACCGCAGGCGTCGAGGTTTTTATTTATGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGACCAGGCGCTTGTGCAGCCAGTTTGTTTGGTGGGGAGTACGCTTCGTGCTCCTCATGGTTGTCATGCTCAGTATATGGCGAATATGGGTTCGATTGCTAGTTTGGTTATGGCTGTTATTATTAATGGGAATGATGAAGACGGTGTTGGGATTGGTGGTACTGGAAGAAGTTCGATGAGGCTTTGGGGTCTAGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTTATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTAGCGGTGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGTGCTGCTTTGTATTATCAGGGAAACTACTACCCGTTAGGTGTTACCCCGACGGAGTCTCAGATAAGGGATATTATTGAGTGGTTGTTGGCATTCCATGGTGATTCGACCGGTTTGAGTACTGATAGTTTGGCCGATGCTGGTTATCCCGGCGCTGCTTCTCTTGGGGATGCGGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCCCATACGGCAAAAGAGATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGCTCTTCCTTTAAGGCCTTTTTAGAAGTCGTGAAGAGCCGTAGTATGCAGTGGGACAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGCCGAACTAGAGTTGCAAGGAGTGGATGAACTGAGTTCCGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCGATGGTCGCATAAATGGATGGAATGCAAAGGTTTCTGAATTGACGGGACTTCTGGTAGAGGACGCTATGGGAAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAAATTGTGGACAAACTTCTTTCTCATGCTTTGAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAAGCTATTGTACACAGTCCAAATGCATTGATACCTCCTATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAACCGTGCAGATGTCATTGGCAAATTGTTGGTGGGGGAGGTTTTTGGTAGTTTCTGTCAGTTAAAAGGTTCGGATGCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGATACAGACAAATTCCCGTTTTCATTTGTTGACCGGCATGGGAAGTTTGTGCAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAAATCATTGGCGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTAACAGTCCAGAGACAACAGGATAGTAGTTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCCTGACTGATGAACAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGACAGCATCGATGATGGGTCCCTGGAGCTTGAAAAGCGGGAGTTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAGGTCTTGGCCGATTTCTTAATGAATGTGGTGCGCTACGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGATGGACTCACTATTCTGCATGCTGAATATAGGATGGTGTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGGTTAGGGCTGAGCATGAGCAGGAAGATTATAAAGTTAATGAATGGCGAAGTCCAATATGTCAGGGAGGCAGAGCGGTGCTACTTCTTAGTCCTTCTTGAACTACCTGTGACGCGGAGAAGCTCAAAAAATGTTAATTAG 3474 0.4301 MASSSRVRKTEPNTSSSISQHHQLQITTTTIKETEENNTTTPNNKSSTSMKKAIAQYTEDARLHAVFEQSGESFDYTQSIRLTTAAHSQSVPEQQITAYLSRIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDSSSSSGFNIGTDVRTLFTHSSAVLLEKAFAAREISLMNPIWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKALCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFMQNRVRMIVDCNASPVRVFQDQALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEDGVGIGGTGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEDAMGKSLVHDLVYKESQEIVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWNRADVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKFVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQVKNPLSGIRFTNSLLESTCLTDEQKQFLETSAACEKQMLKIIRDIDLDSIDDGSLELEKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEYRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKNVN* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3792 1157 PRINTS Phytochrome signature 582 600 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 352 373 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 765 785 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 267 286 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 464 484 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 167 189 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 745 762 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 549 568 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 652 668 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 PRINTS Phytochrome signature 671 686 IPR001294 GO:0006355|GO:0009584
Mal4g3792 1157 CDD HisKA 924 983 IPR003661 GO:0000155|GO:0007165
Mal4g3792 1157 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1035 1141 IPR003594 -
Mal4g3792 1157 SUPERFAMILY GAF domain-like 442 620 - -
Mal4g3792 1157 Pfam His Kinase A (phospho-acceptor) domain 935 987 IPR003661 GO:0000155|GO:0007165
Mal4g3792 1157 Pfam GAF domain 252 434 IPR003018 GO:0005515
Mal4g3792 1157 TIGRFAM sensory_box: PAS domain S-box protein 656 771 IPR000014 -
Mal4g3792 1157 Gene3D PAS domain 796 909 - -
Mal4g3792 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 103 223 IPR035965 -
Mal4g3792 1157 SMART HKATPase_4 1035 1150 IPR003594 -
Mal4g3792 1157 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1151 - -
Mal4g3792 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 654 763 IPR035965 -
Mal4g3792 1157 MobiDBLite consensus disorder prediction 1 51 - -
Mal4g3792 1157 ProSitePatterns Phytochrome chromophore attachment site signature. 352 361 IPR013516 -
Mal4g3792 1157 CDD PAS 660 767 IPR000014 -
Mal4g3792 1157 SUPERFAMILY PYP-like sensor domain (PAS domain) 797 900 IPR035965 -
Mal4g3792 1157 Pfam PAS fold 98 219 IPR013654 GO:0006355
Mal4g3792 1157 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 998 1147 IPR036890 -
Mal4g3792 1157 Gene3D - 439 612 IPR043150 -
Mal4g3792 1157 SMART HisKA_10 924 987 IPR003661 GO:0000155|GO:0007165
Mal4g3792 1157 ProSiteProfiles PAS repeat profile. 649 720 IPR000014 -
Mal4g3792 1157 PIRSF Phytochrome_conventional 30 1155 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mal4g3792 1157 Gene3D PAS domain 102 355 - -
Mal4g3792 1157 Gene3D - 233 595 IPR029016 -
Mal4g3792 1157 SMART gaf_1 252 444 IPR003018 GO:0005515
Mal4g3792 1157 Gene3D PAS domain 644 777 - -
Mal4g3792 1157 SUPERFAMILY GAF domain-like 232 431 - -
Mal4g3792 1157 Pfam PAS fold 652 767 IPR013767 GO:0006355
Mal4g3792 1157 Pfam PAS fold 783 902 IPR013767 GO:0006355
Mal4g3792 1157 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 252 424 IPR016132 -
Mal4g3792 1157 ProSiteProfiles PAS repeat profile. 783 835 IPR000014 -
Mal4g3792 1157 ProSiteProfiles Histidine kinase domain profile. 930 1150 IPR005467 -
Mal4g3792 1157 Pfam Phytochrome region 447 622 IPR013515 GO:0006355|GO:0009584
Mal4g3792 1157 Gene3D - 968 1139 IPR036890 -
Mal4g3792 1157 CDD HATPase_Phy-like 1034 1146 IPR044767 -
Mal4g3792 1157 PANTHER PHYTOCHROME 34 1151 - -
Mal4g3792 1157 SMART pas_2 651 718 IPR000014 -
Mal4g3792 1157 SMART pas_2 782 852 IPR000014 -
Mal4g3792 1157 CDD PAS 794 902 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3792 Mal-Chr4 111059810 111065427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3792 25 1148 Histidine Kinase Gene Family AT4G16250 74.051 0.0 1755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3792 K12121 - gmx:100794865 1955.64