Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3755 ATGTTGCATAAGTCGAATCTTGAAGTATTGTTGAGCTATGTTGATGTCATTGACGTTGATGTTGTATTCCCCATTTCAGGTTGTGGCTTTGTAGCCTCATCAGAAGCGTTGTCCAACCATTTCAGCCATAAACAGGAGGATTCTCAAATCAAATTTTCTTATGGTCACTCTTTCACGGTGTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAATAATAGTACTATGCTTCTAGGAAATGCAGTCAATGTTAGTTGCATTGGTCCTAACTCTTCTGAGGCCGAGTATAGTTATGATTTATCGGCTAAGTCCGAGATATGCAGTCTGAAGTTACATGCTTTTCCAAAGAATGTCCAACATGTTACTTTAGCAACTCTTTCATCAGAGTTCCTCGTGATTCCTTCTGGTTATTTTGGTTCTTCTAAACTTGACCCCCCCCTGAGGGTTGAGAGTTCAGACACAATAGTCAATGTGAAGAAGAAAATTCTTGACAAGGAAGGGATCGAAGTGAAAATGCAATATCTTCTCTTTGCCGGTAAGCAACTAGTAGATGAATGCATGACCCTTGCAAATTACAACATCCAAGATAAGTCAACCCTCGTCCTCGGCGTCCGCATGATTGGGGACTAG 663 0.4027 MLHKSNLEVLLSYVDVIDVDVVFPISGCGFVASSEALSNHFSHKQEDSQIKFSYGHSFTVSLKSNDETIVLQEENDGKLFILNNSTMLLGNAVNVSCIGPNSSEAEYSYDLSAKSEICSLKLHAFPKNVQHVTLATLSSEFLVIPSGYFGSSKLDPPLRVESSDTIVNVKKKILDKEGIEVKMQYLLFAGKQLVDECMTLANYNIQDKSTLVLGVRMIGD* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3755 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 24 154 IPR044286 -
Mal4g3755 220 Gene3D - 154 220 - -
Mal4g3755 220 PRINTS Ubiquitin signature 175 195 IPR019956 -
Mal4g3755 220 PRINTS Ubiquitin signature 154 174 IPR019956 -
Mal4g3755 220 SMART ubq_7 130 216 IPR000626 GO:0005515
Mal4g3755 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 24 154 - -
Mal4g3755 220 ProSiteProfiles Ubiquitin domain profile. 130 220 IPR000626 GO:0005515
Mal4g3755 220 SUPERFAMILY TRAF domain-like 24 149 - -
Mal4g3755 220 Pfam Ubiquitin family 157 216 IPR000626 GO:0005515
Mal4g3755 220 SUPERFAMILY Ubiquitin-like 157 217 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3755 Mal-Chr4 110332271 110333971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3755 158 219 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 64.516 2.68e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3755 - K04506 mtr:MTR_4g058025 145.976