Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3682 ATGAATGGTATTCATCATATCTTAGATGCGGAAGATCTTAGAAGTAACATGGTTTCAGCTATCATTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCAGATTATAACATCCAAAAGGAGTCTACCCTTCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACAGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGATCAGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTATAATATTGAGTCTACTCTCCATCTTGTGTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAAAGCTCGGACACAATTGACAATGTGAAGGCTAAGATACAGGACATGGAGGGTATCCCTCCAGACCAGCAAAGGCTCATTTTTGCGGGAAAGCAGCTCGAAGATGGCAGAACTCTTGCTGATTACAACATCCAGAAAGAGTCAACTCTTCACCTTGTTTTGCATCTTCGTGGTGGTATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTGAAGGCTAAAATTCAGGACAAGAAGGGCATTCCCCCAGACCAGCAAAGATTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGGACTCTTGCTGATTATAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTTCGTTTGAGGGGAGGGATGCAGATATTTGTGAAGACATTGACCGGAAAGACCATTACCCTAGAGGTAGAAAGTTCAGACACAATTGATAACGTAAAGGAAAAAATACAGGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGTTAGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAAGAGTCTACACTTCACCTTGTATTGCGTCTTCGTGGTGGAAATTAA 1155 0.4468 MNGIHHILDAEDLRSNMVSAIIESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDMEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLHLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKKGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKEKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3682 384 PANTHER UBIQUITIN 13 80 286 - -
Mal4g3682 384 PANTHER UBIQUITIN 13 21 210 - -
Mal4g3682 384 PANTHER UBIQUITIN 13 155 362 - -
Mal4g3682 384 ProSiteProfiles Ubiquitin domain profile. 8 81 IPR000626 GO:0005515
Mal4g3682 384 PANTHER UBIQUITIN 80 286 - -
Mal4g3682 384 CDD Ubl_ubiquitin 308 383 - -
Mal4g3682 384 PANTHER UBIQUITIN 307 383 - -
Mal4g3682 384 PANTHER UBIQUITIN 155 362 - -
Mal4g3682 384 ProSitePatterns Ubiquitin domain signature. 108 133 IPR019954 -
Mal4g3682 384 ProSitePatterns Ubiquitin domain signature. 182 207 IPR019954 -
Mal4g3682 384 Pfam Ubiquitin family 84 153 IPR000626 GO:0005515
Mal4g3682 384 Pfam Ubiquitin family 310 381 IPR000626 GO:0005515
Mal4g3682 384 Pfam Ubiquitin family 22 79 IPR000626 GO:0005515
Mal4g3682 384 Pfam Ubiquitin family 158 229 IPR000626 GO:0005515
Mal4g3682 384 Pfam Ubiquitin family 234 305 IPR000626 GO:0005515
Mal4g3682 384 CDD Ubl_ubiquitin 156 231 - -
Mal4g3682 384 ProSitePatterns Ubiquitin domain signature. 258 283 IPR019954 -
Mal4g3682 384 SMART ubq_7 156 227 IPR000626 GO:0005515
Mal4g3682 384 SMART ubq_7 6 77 IPR000626 GO:0005515
Mal4g3682 384 SMART ubq_7 232 303 IPR000626 GO:0005515
Mal4g3682 384 SMART ubq_7 308 379 IPR000626 GO:0005515
Mal4g3682 384 SMART ubq_7 82 151 IPR000626 GO:0005515
Mal4g3682 384 ProSitePatterns Ubiquitin domain signature. 32 57 IPR019954 -
Mal4g3682 384 CDD Ubl_ubiquitin 232 307 - -
Mal4g3682 384 PRINTS Ubiquitin signature 360 381 IPR019956 -
Mal4g3682 384 PRINTS Ubiquitin signature 318 338 IPR019956 -
Mal4g3682 384 PRINTS Ubiquitin signature 339 359 IPR019956 -
Mal4g3682 384 SUPERFAMILY Ubiquitin-like 143 231 IPR029071 -
Mal4g3682 384 ProSiteProfiles Ubiquitin domain profile. 82 153 IPR000626 GO:0005515
Mal4g3682 384 SUPERFAMILY Ubiquitin-like 81 155 IPR029071 -
Mal4g3682 384 SUPERFAMILY Ubiquitin-like 18 81 IPR029071 -
Mal4g3682 384 SUPERFAMILY Ubiquitin-like 306 383 IPR029071 -
Mal4g3682 384 PANTHER UBIQUITIN 13 307 383 - -
Mal4g3682 384 CDD Ubl_ubiquitin 82 155 - -
Mal4g3682 384 Gene3D - 156 231 - -
Mal4g3682 384 Gene3D - 232 307 - -
Mal4g3682 384 Gene3D - 82 155 - -
Mal4g3682 384 Gene3D - 308 384 - -
Mal4g3682 384 Gene3D - 11 81 - -
Mal4g3682 384 ProSiteProfiles Ubiquitin domain profile. 308 383 IPR000626 GO:0005515
Mal4g3682 384 ProSitePatterns Ubiquitin domain signature. 334 359 IPR019954 -
Mal4g3682 384 SUPERFAMILY Ubiquitin-like 230 307 IPR029071 -
Mal4g3682 384 ProSiteProfiles Ubiquitin domain profile. 232 307 IPR000626 GO:0005515
Mal4g3682 384 PANTHER UBIQUITIN 21 210 - -
Mal4g3682 384 ProSiteProfiles Ubiquitin domain profile. 156 231 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3682 Mal-Chr4 108636137 108637291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3682 22 82 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.721 9.83e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3682 K08770 - psom:113313254 691.034