Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3642 ATGGCAACAACAGAGGCAGCTGGTCCTAGATATGCACCTGACGATCCCACGCTACCGGCGCCGTGGAAAGGTTTGATTGATGGAAGTACTGGTATGTCGTATTATTGGAATCCTGAAACTAATGTTACTCAATATGAAAAGCCGGGGCCGGTGAATCCACCTGCGCCTGCGGCTTCTACGCCGAGCTTGGCACCTATACCGGTGGCTCATGGGCAACAACAGCACGGGCAACAGATGATGCAAGTGCAGGCTACACAGCAACAACAGCAGGCGAGTCATTATGGTCAGGGGATGGCACAGCAGCAGAGTCCTCATGTTGTGCAGGCGGTCGCTCAGCAGCAGCCTTCTCAGACTGTTCAACCTGTGCAGCAGCAGCCGGCGCAGCAACCTGGGTTACATCAAGCTAGACCGCAAATGATGCAGCCTCAAGGGCAGCCGATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGATGCCTCCGCAGGCGATTCCTCGTCCACATCAATTTGGACAAGGGAATTCTCAGGATCACGGTTCGCAGCTTGTGCAACCGCAAGCGCCGCAATTTACTCCTCAGAATGTGCATTATATGGGGTATCAACAAAACATGATTACACCTAGGCAACCTAACTCCCAGCAGATTCAGCCAAACATGCACCCATCTGGCCAGCAATCAAACCCACCGCAGAATCAGCATAACATACATAACCCACCTTTTGAAAATCAGCAAGATTTTAAACCAGCAATGCCGAAGATGGAGGAATCGGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCGCCATCACAGTATCCACAAAGGAGTGCCTTGCCTGTTCAAAACAACCATAACGTTCCCGGCGAAGTTGGTTCTGGTCAAGTGCCTACTGCAGGTGTTAATGCTGGCCAACCACAACAATTCAGGGGCGGCTTTTCAGGTGGCATGCAACAGCCTACCCCGACAATGCAGTCACAGCAGGCTGGTTCTGATTTGTTTTACCAACATGGTCCTAACTTTCAAAACCAGATGAGCCCGGGAATGATGCACAGTCATCCATCCAATGTGCATCCTGTTGTTCAAAAGATTGGACACGAGGGCAATGTACATGGTAGAGGTGGAAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACCCAAATGCCAATTTCCAGAAATCCGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCCAGTGGAAATGGAAGTGTTATTACCGGGAATGCTATGAGTAACATGTTCACACCTCCAATAGGAGGAGGACCTTCCGCTCCTTCAAGTAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACATGAAGTTACAGCATCGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTATGCTCTGCGGGCTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCTATTGCCCTACAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTTAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACCGTTTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCCTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACACCTGGCAGGCTCAATGATATACTTGAAATGAAAAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAGATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCAGGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCCCAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCTACAAAGAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAGTCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAATGGCATATACCTTTTTCTCTGAACAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCACGTGCTTCCAGAGTTAAGACAAATTGCTTCACGTGGACCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAGTCGGTTTGACTCTGGTAGTGGTGGTGGGCGCTGGGAGACTGGTGGTCGTGGCGGCATGAGGGACAGTGGTTTTGGTGGTCGTGGTGGCATGAGGGACGGTGGTGGTTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGTGGTTTTGGTGGTCGCGGTGGAATGAGGGATGGTGGTGGTGGAAACGGTGGGAGAGGTGATTTCTTTCCTGGCAGGGGCAACAGGGGTAGAGGATTTGACGCTCCTCGTGGGGGCCATGTTGGTTGGGGTAGGGGTGACCGCGGTGGTCCTAGTGATCGGTACAATATGGATGGTCGTGGACAAGGGCGTGGACGTGGACGATTTGACAACAGAAGAGATGTTCAGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGAAAGAGTTCGAACATGGGATATCAACAGAAGCAGCAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGTCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGTCGTAGTCCACGCCGGAGTAGGAGCCGTGGTCGCAGTTATAGCCGCAGCCGCAGCCCCAAAATTAATAAGCGCAAGTCAAAATTTTCTGATACGAATGATATCGTGGCACCTGAAGCAGGAGCTTCTGATCCTAAAATGTTCCCTGTATCTGCCAACACCCAAGGGAATTCTGTTTCGGGAACAGAGCATGTGGAACAGCTACCTGTTGTTGGGAGCGCTGGACCAAATAATCCAGAGGCTGTAGTGGATGTTAGTCACCAACCAGCTTCTGATATTTGA 3456 0.4899 MATTEAAGPRYAPDDPTLPAPWKGLIDGSTGMSYYWNPETNVTQYEKPGPVNPPAPAASTPSLAPIPVAHGQQQHGQQMMQVQATQQQQQASHYGQGMAQQQSPHVVQAVAQQQPSQTVQPVQQQPAQQPGLHQARPQMMQPQGQPMMQYQGQQFQQMHHQMPPQAIPRPHQFGQGNSQDHGSQLVQPQAPQFTPQNVHYMGYQQNMITPRQPNSQQIQPNMHPSGQQSNPPQNQHNIHNPPFENQQDFKPAMPKMEESEFKNGSQVGFSPSQYPQRSALPVQNNHNVPGEVGSGQVPTAGVNAGQPQQFRGGFSGGMQQPTPTMQSQQAGSDLFYQHGPNFQNQMSPGMMHSHPSNVHPVVQKIGHEGNVHGRGGNDYYYNSNKEMPPMGRQQPDMTQMPISRNPQDMRIGNSPFQNNVPSGNGSVITGNAMSNMFTPPIGGGPSAPSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTASGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMSRFDSGSGGGRWETGGRGGMRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGGGNGGRGDFFPGRGNRGRGFDAPRGGHVGWGRGDRGGPSDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSRSPERVRTWDINRSSSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKINKRKSKFSDTNDIVAPEAGASDPKMFPVSANTQGNSVSGTEHVEQLPVVGSAGPNNPEAVVDVSHQPASDI* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3642 1151 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 292 963 - -
Mal4g3642 1151 SMART ww_5 17 50 IPR001202 GO:0005515
Mal4g3642 1151 MobiDBLite consensus disorder prediction 1106 1122 - -
Mal4g3642 1151 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 1033 1081 - -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 45 187 - -
Mal4g3642 1151 Gene3D - 12 50 - -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 71 161 - -
Mal4g3642 1151 Gene3D - 466 700 IPR027417 -
Mal4g3642 1151 Pfam DEAD/DEAH box helicase 515 685 IPR011545 GO:0003676|GO:0005524
Mal4g3642 1151 MobiDBLite consensus disorder prediction 442 461 - -
Mal4g3642 1151 CDD SF2_C_DEAD 710 839 - -
Mal4g3642 1151 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Mal4g3642 1151 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 292 963 - -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 211 249 - -
Mal4g3642 1151 SUPERFAMILY WW domain 10 49 IPR036020 GO:0005515
Mal4g3642 1151 MobiDBLite consensus disorder prediction 211 244 - -
Mal4g3642 1151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 696 IPR014001 -
Mal4g3642 1151 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 869 1151 - -
Mal4g3642 1151 Gene3D - 701 871 IPR027417 -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 980 1030 - -
Mal4g3642 1151 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Mal4g3642 1151 MobiDBLite consensus disorder prediction 444 461 - -
Mal4g3642 1151 Pfam WW domain 18 48 IPR001202 GO:0005515
Mal4g3642 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 845 IPR027417 -
Mal4g3642 1151 MobiDBLite consensus disorder prediction 171 187 - -
Mal4g3642 1151 CDD WW 19 48 IPR001202 GO:0005515
Mal4g3642 1151 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Mal4g3642 1151 MobiDBLite consensus disorder prediction 1 24 - -
Mal4g3642 1151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 869 IPR001650 -
Mal4g3642 1151 SMART helicmild6 750 830 IPR001650 -
Mal4g3642 1151 SMART ultradead3 510 713 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3642 Mal-Chr4 107671528 107678850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3642 489 850 Eukaryotic Initiation Factors Gene Family AT3G19760 33.609 2.67e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3642 K12823 - gmx:100807830 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g3642 4 107671528 107678850 Mal4g3642 4 107671528 107678850 ECH