Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3575 ATGGCTTCTTCTGGTGTTGAAATTGCGTCTTCTTCACCGTTTGGTTGTGTTCTAAGGGACCGTAATCATCGTGATGGATGCAGAGAAAGTACCAAAGTTAAGGCTACACATGCTGTTTTTCAAAGAAACATTAAGAACTTTGTCATGGACCACCTTAACACGTGCATTACCATGTCTTCTGATTCTCCAACAAATGAAAACAACAACGAGGGTCAAATGAAGAACAACAACAATAACAATGTTTCTCCTTGGGTTTCAAAAGGTAGCACTAATCTTGCGAGGCTTCGTTTGAAGAGAAACAATCACAATGATATTATCAACAATAATAAGGATAACGAAAATGAATCATCTTTGGCTTCGTTGATTAGTCCGAGACATTCGCGCCTTCTTGATCGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCAAATTTGGAGAATGAAGCTGAATTGCTGTCCATTGACAACACCGACAATAACAACAATATGGCTGCAATTGTAAGGACATCTAGTTCTACCTCTGATGAATGTGCTTCGGAGATATCGAACCGTGGTGCATCTTCACTTGTTCAATTATGGGAAAAGAGACTTAACAAATCAAATGGATCCAAACCAAACACTCCAATGGAGAAAACAAGTCCAACTAGTGTTCCAAGTGCAACTTGCAACAATGAGAATGTGTCTGTTGTTAACACTCCAATGGAGAAAACAAGTCCAACTGGTGGTACAAGTGCAACTTGCAACAATGAGAATGTGTTTGTTGTGGAAGAACAAAGAGCGTCGGAACTAGGAGAGTGTTATGAAGGACAGTTATCAGTGAACGAAGAATCGTTTTCATTTTCTTCGTTTACTGATTGGGAATCTGATAAGACAGGTGATCAGAGTAGGTTGTGTTCAGGTGATCAAAGTAGGTGGTGTTCGTCGGAAAGTGATAGAGTCAGTGTTGCTGATATCATAAAGAAACTCACTGCTACGAGTCAAACTCAGAGTTCACCTCCATCATCTTCTGGTGATGACAATGATCATGAAGGGTGTGGTGGTGGCAGTGTGGCAAGTTCGCCTCGTAAAGAATTTGCACCAGAACTTTCAGAACAAAGAGCTTTTCCGCAGGTTACTTGTTCACTTCGAATTAGAGGACGACGAGCTTTCAATGATTTGCTTATGCAGTTGGAGCGTGATAGGCACGGGGAGCTAAAGAACTTGGCTGAACGTGGAACTGTCTCCAAGTTCACACAAAAAGGTCGCATTCAGGCATTACTTCGACTTAAATTGTTACAGCGTGGCGCGGCAGCTAATGTTCCATCACACCAGAAATCAACATCATCTGAAATAAACAGACAAGTACAACTAAACGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCACTAGGGTTGAACAAAGAAATACAGTCCAGGCAGAAGTAGCGAACACACGAAGTCCTCCCAAGGAGATAGTAAACAACATCACACAATTAGAAAAGTCTACCACTGCTGATCAAATCAGCAAAGACAGAGAAACCTCTACCACTGATGATCAAATCAGCAAAGACACAAGCAGCCAGAATGTGCATGGAACTGCCAGTCCCGCCATAGAATTGACAAAGTCAGAGACTCAGACTAGAGAAGAAGATCATCAAAGCTCAAATGTCATGTCTCAAGAAACATGTTTTGAGGCTCAGCGTGATTACTCTAAGGAAACTTCTGAGGAAACTACATCAATAACAGATTCAAATCTTAAGGAGAAAGAGGAAATTAACCAGCAATATGATGAAACCAGTTATGATTGTGCAGTAGAAGAGGAAGGAAGTAGCCAGAACTATGCTGAAAGCAGTTATGAAGAGATGGTGGAAGAGAATTATGATGAAAATAATTATGACTGGATCAGTGAAATTTCTCGACCGAGGAGCTATTGGGAAGAGCGGAGACAAGCATGGTATAGAGAGATGCTTGACACTGGTTCTCCAAATGAAGATATACAAGTGCTTCTTCAAAGAAGAACAGTTTCAACATTCCTTTCTAGTGGCTTCCGCGAAACAATGGATAGGTTGATGCAATCTCATAGAGGAACACAAACACATCTAGTTAGTAGTCAAGATGATGAGATAGACAACGAAGGGTTGATGGCGTTTTTCCAAGAACGCCTGTTTTCTGGAAGATCTCCTCAAGAAAATGGAACAGAGACAATGGCAGACGAAGAAGATGAAAGGGTAACTGAGGAAGAAGAGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCAAGAAGAGAAAGAGCATGAAGAGGATCAAGGAGGGGAGAGCTTGGTTAGTAGTAGCTTGGTTAGTAGTTTATTTCATGAAGTTGGAGACTATTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGCTGGTGATGATTTTGATAGAGTTGCTTCTACATCCTCACAACCTTATCAATCTCAGTCTCCCTATCATGATAATCGGACAAACTCATCATCTACCAATCATCATTCAATTGAAATGGATCTCATATATGATATGAGAGGCCATATGGAGCAACTTTATCAAGAGATGACTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCACATGCAGTTACAACAATCCAATAACCAAAGAGTGCAAACAGCTGAAAGAGGAGAAAAAAAGCCACATAACAAGACTGGTAAGAAAGGAAACTGCTGCATTTGCAATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTATGAAATGTGCCAATGATTTACGGTGGAACAACGGAAAATGTCCAATATGTCGTGCTAAAATAGACGATGTTGTTCGAGTTTATCTTGATATTTAG 2877 0.4105 MASSGVEIASSSPFGCVLRDRNHRDGCRESTKVKATHAVFQRNIKNFVMDHLNTCITMSSDSPTNENNNEGQMKNNNNNNVSPWVSKGSTNLARLRLKRNNHNDIINNNKDNENESSLASLISPRHSRLLDRWAARQAREMVSNLENEAELLSIDNTDNNNNMAAIVRTSSSTSDECASEISNRGASSLVQLWEKRLNKSNGSKPNTPMEKTSPTSVPSATCNNENVSVVNTPMEKTSPTGGTSATCNNENVFVVEEQRASELGECYEGQLSVNEESFSFSSFTDWESDKTGDQSRLCSGDQSRWCSSESDRVSVADIIKKLTATSQTQSSPPSSSGDDNDHEGCGGGSVASSPRKEFAPELSEQRAFPQVTCSLRIRGRRAFNDLLMQLERDRHGELKNLAERGTVSKFTQKGRIQALLRLKLLQRGAAANVPSHQKSTSSEINRQVQLNGSAIMQLREKFSTRVEQRNTVQAEVANTRSPPKEIVNNITQLEKSTTADQISKDRETSTTDDQISKDTSSQNVHGTASPAIELTKSETQTREEDHQSSNVMSQETCFEAQRDYSKETSEETTSITDSNLKEKEEINQQYDETSYDCAVEEEGSSQNYAESSYEEMVEENYDENNYDWISEISRPRSYWEERRQAWYREMLDTGSPNEDIQVLLQRRTVSTFLSSGFRETMDRLMQSHRGTQTHLVSSQDDEIDNEGLMAFFQERLFSGRSPQENGTETMADEEDERVTEEEEEGEGEEEEEEEEEEEKQEEKEHEEDQGGESLVSSSLVSSLFHEVGDYSNQSSSWSYRDNEAGDDFDRVASTSSQPYQSQSPYHDNRTNSSSTNHHSIEMDLIYDMRGHMEQLYQEMTELRKSIKSCMDMQMHMQLQQSNNQRVQTAERGEKKPHNKTGKKGNCCICNEMKVDSVLYRCGHMCACMKCANDLRWNNGKCPICRAKIDDVVRVYLDI* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3575 958 MobiDBLite consensus disorder prediction 499 513 - -
Mal4g3575 958 CDD mRING-HC-C3HC5_NEU1 905 945 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 323 338 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 808 837 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 717 778 - -
Mal4g3575 958 Coils Coil 135 155 - -
Mal4g3575 958 Pfam Zinc finger, C3HC4 type (RING finger) 903 951 - -
Mal4g3575 958 PANTHER BNAC05G24000D PROTEIN 1 957 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 475 591 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 728 763 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 514 536 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 475 498 - -
Mal4g3575 958 PANTHER BNAC05G24000D PROTEIN 1 957 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 560 590 - -
Mal4g3575 958 ProSiteProfiles Zinc finger RING-type profile. 906 945 IPR001841 -
Mal4g3575 958 SUPERFAMILY RING/U-box 905 950 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 197 221 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 809 837 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 323 363 - -
Mal4g3575 958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 878 957 IPR013083 -
Mal4g3575 958 MobiDBLite consensus disorder prediction 59 86 - -
Mal4g3575 958 MobiDBLite consensus disorder prediction 284 305 - -
Mal4g3575 958 Coils Coil 731 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3575 Mal-Chr4 105621206 105625540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3575 898 954 C3H Transcription Factor Family AT3G06140 35.088 1.12e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3575 - - mtr:MTR_2g437720 1477.61