Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3548 ATGGCTCCTAAAGATATGAAAGTTGACTACATAACTGAGGACTCGAAGAGGAAGGCAACATTCAAAAAAAGGAAACATGGTATAATTAAGAAGATTAATGAAATTACAACCCTTTGTGGAATTGATGTATGTGGCATAATCTATGATGAAAGCAATGCTCGAGCAACGATTTGTCCATCAAAAGAAGGAGTCGAAATGGTGTTGGACAAGTTCGGGAGTTTTCCTGAATCGGAACAAAGAAAAAGGATGGTGAATCATGAGGACTTCTTGAGGAAATCCATAGAGAAATCCTCTGAGAAGTTGAAGAACAGACAAGATAGATCCAAGAAGAAGGAAATGAATGATCGAATTGGTGAATTCATTCATACAAATAAATTTGATGGAAATGTGAGTGAGAGTGATCTCGAAGATCTATCATTGCTTATTGATGACAAACTAAATGAAGTCGAAGAGGAGATCAGATTTACTCAGGCCTGA 477 0.369 MAPKDMKVDYITEDSKRKATFKKRKHGIIKKINEITTLCGIDVCGIIYDESNARATICPSKEGVEMVLDKFGSFPESEQRKRMVNHEDFLRKSIEKSSEKLKNRQDRSKKKEMNDRIGEFIHTNKFDGNVSESDLEDLSLLIDDKLNEVEEEIRFTQA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3548 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mal4g3548 158 MobiDBLite consensus disorder prediction 95 115 - -
Mal4g3548 158 SUPERFAMILY SRF-like 6 95 IPR036879 GO:0003677|GO:0046983
Mal4g3548 158 Gene3D - 13 124 IPR036879 GO:0003677|GO:0046983
Mal4g3548 158 PANTHER MADS BOX PROTEIN 2 154 - -
Mal4g3548 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal4g3548 158 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mal4g3548 158 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal4g3548 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Mal4g3548 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal4g3548 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal4g3548 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3548 Mal-Chr4 104928445 104929281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3548 6 149 Type I MADS-box Gene Family AT1G65330 38.194 2.56e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal4g3548 SRF-TF 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3548 - - mtr:MTR_2g035580 215.312