Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3391 ATGGACAAACTTTCGGGGGATTCTTTCCCAGTTCGTGGTGCTGCAGGTCTGTCTGAGATTTCCTCACTTAGTATTCCAAAAAAATTGGGAAGTAGTGCATGGAGAATACCACACACAACTGATATAATTCAAGAATCAAATGATGTTAGCTTCTTTTCTACTTCCCTGCCTGTTCTTCCACATGAAAAGTTAAATTTGACCGATTCTGAACAAGATTCCGAGCAATATGGTCTAGCGGTGGATGATAACTTGCTAACATTAGGCAAAGTTCACAAAGAGGATGAAGGAGTTGATCCTTTTGATGATTTTGAGACCAGCGCCATTGGAAACATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTTAGTAGGTTGCCAAATCAGCTGGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGAGGTTTTGAAATGGATTTCGAACCACAAGAGGGTCTTAGTTTTGGCATTTCAAAGATGAGCATATCTGATGGAATTGCTTCGAATGGCATTGGATCTTATGCAATTCCGAATGGTGTGGGGACGGTGGCTGGGGAGCATCCCTACGGAGAGCATCCATCAAGGACATTGTTTGTTCGAAACATCAATAGTAATGTTGAGGATTCTGAACTAAGAATACTATTTGAGCAATACGGGGATATCAGAACTTTGTACACAGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTTGATATCCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACCCTCGTAGTGTTCAATTTAGATCCATCGGTATCAAATGATGACCTTCGCCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGAGCACGCAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGTGCGAACTTTTAGGAGTCAAGTAGGTTCACCTATAGCCAATTCTCCTCCAGGTAGCTGGGCACAATTTAATAGTCCTGTTGAACCTAATCCATTAGGTTCTTACAGCAAATCCCCTGGTTTGGGTCATGCCAGCCCTATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCGCATGCGTCAACATCTCCCAAAATTGCGCCGATTGGCAAGGATCCTGGAAGAGTTTCAAATCACATGTTTGCTAGCTCAGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTTTCCTGAACAAAAAGCAAATGTAAGTCCTAGGCCTATATCTGCTTTTGGTGAATCGAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCGCAATTTCTGTGGGGAAGCCCGACTCTTTACTCAGAGAATTCAAACACATCTGCCTGGTCTTCATCTTCCCTTGGGCATCCATTTACATCTAGTGGCCAAAGGCAGGGTTTCCCATACACGGGTCATCGTAATCCTTTTCTTGGCTCCCAGCACCATCATCATGTAGGATCTGCTCCCTCTGGCCTTCCTCTTGAACGGAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCATGAGCCCTATCGGATTTGGGAATTCAAATCGCAGTGATGGAAATTTTATGATGAACATGGGTTCTCGTCCATCTGTCGGGCATGGTATTGGCCTTTCAGCAACTACCAGTGAAATTGGTTCGCCTAATTTTGGAATGATGTCACTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTGTATGCCGGACCAGGAGTGTCTAGCATTGAGGGATTTGGCGAACGTGGACGAAGTAGGCGACCTGATAATAATGTGAACCAAATTGAGAGTAAGAAGTTGTACCAGCTGGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACCTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAAGGGACTTATGATTTCCTCTACTTGCCAATTGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATTGTCGCCTTCTATAAGGCTTTTAATGGAAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCCAGCTTAATGAATGAGGATAAGCGGTGTCGGCCAATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGTATTCGTCAGCCGGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCAAAGGGCAATTCGGACGATAACCTCGAGAAAGATTAA 2592 0.4259 MDKLSGDSFPVRGAAGLSEISSLSIPKKLGSSAWRIPHTTDIIQESNDVSFFSTSLPVLPHEKLNLTDSEQDSEQYGLAVDDNLLTLGKVHKEDEGVDPFDDFETSAIGNMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFVNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGSYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEVRTFRSQVGSPIANSPPGSWAQFNSPVEPNPLGSYSKSPGLGHASPINTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSNHMFASSANSGSTQGVAFQHSISFPEQKANVSPRPISAFGESNSSSSSVGTLSGPQFLWGSPTLYSENSNTSAWSSSSLGHPFTSSGQRQGFPYTGHRNPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNRSDGNFMMNMGSRPSVGHGIGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGVSSIEGFGERGRSRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDDNLEKD* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3391 863 CDD RRM3_MEI2_like 706 791 IPR034454 -
Mal4g3391 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 276 IPR000504 GO:0003723
Mal4g3391 863 MobiDBLite consensus disorder prediction 843 863 - -
Mal4g3391 863 CDD RRM1_MEI2_like 202 278 IPR034453 -
Mal4g3391 863 SMART rrm1_1 204 272 IPR000504 GO:0003723
Mal4g3391 863 SMART rrm1_1 289 357 IPR000504 GO:0003723
Mal4g3391 863 SMART rrm1_1 705 781 IPR000504 GO:0003723
Mal4g3391 863 MobiDBLite consensus disorder prediction 535 574 - -
Mal4g3391 863 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 858 - -
Mal4g3391 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 355 IPR000504 GO:0003723
Mal4g3391 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 269 IPR000504 GO:0003723
Mal4g3391 863 Gene3D - 697 792 IPR012677 -
Mal4g3391 863 MobiDBLite consensus disorder prediction 383 406 - -
Mal4g3391 863 Pfam RNA recognition motif 2 703 799 IPR007201 -
Mal4g3391 863 PANTHER PROTEIN MEI2-LIKE 2 15 858 - -
Mal4g3391 863 SUPERFAMILY RNA-binding domain, RBD 200 358 IPR035979 GO:0003676
Mal4g3391 863 Gene3D - 288 384 IPR012677 -
Mal4g3391 863 SUPERFAMILY RNA-binding domain, RBD 705 790 IPR035979 GO:0003676
Mal4g3391 863 MobiDBLite consensus disorder prediction 535 553 - -
Mal4g3391 863 CDD RRM2_MEI2_like 287 357 - -
Mal4g3391 863 Gene3D - 192 287 IPR012677 -
Mal4g3391 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 361 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3391 Mal-Chr4 99513010 99518729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3391 198 514 Eukaryotic Initiation Factors Gene Family AT3G16380 24.138 2.16e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3391 - - gmx:100812324 1456.04