Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3389 ATGACAGAACTTACAAAGTTCAGCGTATTATGCAGTCTCTTAACATGGACACAACGAACAAAATCTCCGGCGAAGAAACGCGCGAAGTTCCGGAAGTTTCTAGACAATTTCTGCACCGATCGGAACTATTTTCCGGCCGTTCGACTCATTCTTCCGAACCTTGATCGTGAACGTGGTTCTTATGGGCTTAAAGAATCTGTTCTTGCTACTTCGCTTATTGATGCTCTTGGAATGGCGAAAGACTCGCAGGATGCTCAGAGGCTTGTGAATTGGAGGAAAGGTGGGGCGAAAACTGGTGCTAATGCCGGTAATTTTGCGCTTGTCGCCGCCGAGGTGCTGCAGCTTAGGCAAGGTACTGCTTCTGGTGGATTGACGATAAAGGAGTTGAATGACTTGCTTGATCAATTGTCTTCCAGTGAAAACAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTCATCCAAAAGACAAATGCTCAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATTTGAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACGTGTGACTTAAAATTAGTATGTGAAAAGCTTAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAATGCAGCTGATGCATGGAAGAAGCTTCATAGTAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACGGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGGGATGTCAGAACTCATAATTCAAAACATTCTTGTGGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACAACCTTGAATCGTTTTGCTGAGTTTGGCTCTAATCAAGAAATAGCCAAGGCAGCAAGGGATGGGCTTGAGAGTAATAGACAGTTATGCTATGTGGCATTTGACATCCTTTACTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAAGCCATTGAAAGGTCGTTTTGAAATTTTACTACCTAATGGTGGTATCAACAGTCACCAGTCTTCTGGTGAACCATGTTGGTCGTTTATTGCTCATAATGTGGAGGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGAGGAGGGAATTGTATTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAGTTGAAGCCGGATTACGTTCATGCTGGCTCTGATCTGGACGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACGTGGGGGAGAGGTTGCTCAATTCTTGGTGGGTCTTGCAGAGCGTTCATCCCCAAATACACATCCCAAACGATTTATCTCCTTATGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTCGAAGCAGTAGTAACCAAACTAAAACCTTACTTCAGAAAGTATCCAAAGACGAGCCCACCAAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGATGTGTGGATCGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACCATAGAATCGGAGGCATTCGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAGGCTTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAACGGTACCACACAGAGGAATACAGAATATGGGAGCAACAAGGACAGTAAACCAAAACGCGTGAAATCCTCAGTAAGAGGAGAAAAGAAAAACTTGTCCATTGTTCCCTCTCATTTAAGTCAGACTGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCCATCTCATTCTCTTGAGTCCTTCCACAAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCTGCAGACAGCAAAGGGTTTAAATTTGAAGCAGCAAAACGTCGTGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATGCACAGAAGAAGCTCATCCCCTTACAGCCGAAGTACTTCCTCTTCCTTTCTGAACTGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCGGACTCTTACTACTTGGATCTCGATCTTGGAGACATCAAACAGCTCTTAAGCAATATTAATAGGTCAGAAGATGTCAGTACTGTCGACCATTACAGGAAAAAATACTGCCCAAAGGATGAGTGGTCTATCTTTAATGGATGCTCCATTTATTTCCACACCACAATGCCATCATTGAAAGAAGATTGGCAAATTCTGTTGGAACTTTCTTCGAAGAGATTCAAGGTTGAAGTTCTCATGGGTGGTGGAAAAGTCACCTCTAATCTCAACTCTGCAACTCATGTGGTGGCATTGTTTGTACCAAGTTGTCATACCAACTATGAAGAAGAAATACAGAAGAGTTTTACTTCAGTTGAGAGAAAACTTCTCCGAAGCAAGAAGTTGCATTTAGTTAATTCCAAGTGGTTTGAAGATTGTTTGAACAGCTGCCAAAGATTATCAGAAGACTCTTATAGCTTAAAGCCCTATGGAATAGAAGAGTCAACTGCTGAGGATTGTGAACATGACTTGGAGGTAGATGCTCATCTGATCAAAGATAATGTAGAAGACCAAAATGTATCCATCTCTAACAAGGGAAGTAAACAGAGAAGTGAAAAAGCTGCTTCTGAAGACAGTTTAACTTTGGCATCCCAAGCGAAGCTTGGCCCAAGGAAAAGAGGAAGACCGCCAGGCAGAGGTATTAAAAAAACAAAAACAGATGGAAACCAAGCTCGAAGGGTACGGCCACAAATTGCGAAAAAGCGTGCTAAAATATCTGAATATGAATCAGATGAAAGTGATTCTCCTGATAAAAGACCATATGAACAAGAGGCTGACATTGTAGAAGTAAGTCTTGATTTTCACAATGAACATTCAAAACCACTTGAGACTGAGAAAACTCATAATGTCCAAGGTACTGAAGGAGTAGAAAGTTCTGAAAAACACAAGGGTATCATTCTAGAGGATTTCAAGGACAACCAACATGAAAACATGTTGGTTTCCGAAATTGAAATGAAAGATGCGCACAATGACCAAAGTAGTCAGGTGACTGAGAAACTTGAAATTATGACTGATCCTGTGCAGGTAATGTTACTTGACATGATTCCTAGCCTTGCCATGAACAAAGTTGAGCAACCTTCGAATCGTCGTGTTGAAGAAGAGAAGCCACCAGAAGTCTCCAACGAAGAGAAGCCACCAGAAGTCTCCAACGAAGAGCAGCCACCAGAAATGACTACAAAGAAAAAGAAAGTTAGTTTCAAGGCTATCGCCGGTGATTTGCTCAAGGATTGGTAG 3537 0.4111 MTELTKFSVLCSLLTWTQRTKSPAKKRAKFRKFLDNFCTDRNYFPAVRLILPNLDRERGSYGLKESVLATSLIDALGMAKDSQDAQRLVNWRKGGAKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAADAWKKLHSKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHGMSELIIQNILVDRCILDGEMLVWDTTLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVKPLKGRFEILLPNGGINSHQSSGEPCWSFIAHNVEEVERFFKETIENREEGIVLKDLSSKWEPSDRSGKWLKLKPDYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERSSPNTHPKRFISLCRVGTGLSDDELEAVVTKLKPYFRKYPKTSPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIESEAFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRNTEYGSNKDSKPKRVKSSVRGEKKNLSIVPSHLSQTDVSSVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYTWVLDCYAQKKLIPLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLGDIKQLLSNINRSEDVSTVDHYRKKYCPKDEWSIFNGCSIYFHTTMPSLKEDWQILLELSSKRFKVEVLMGGGKVTSNLNSATHVVALFVPSCHTNYEEEIQKSFTSVERKLLRSKKLHLVNSKWFEDCLNSCQRLSEDSYSLKPYGIEESTAEDCEHDLEVDAHLIKDNVEDQNVSISNKGSKQRSEKAASEDSLTLASQAKLGPRKRGRPPGRGIKKTKTDGNQARRVRPQIAKKRAKISEYESDESDSPDKRPYEQEADIVEVSLDFHNEHSKPLETEKTHNVQGTEGVESSEKHKGIILEDFKDNQHENMLVSEIEMKDAHNDQSSQVTEKLEIMTDPVQVMLLDMIPSLAMNKVEQPSNRRVEEEKPPEVSNEEKPPEVSNEEQPPEMTTKKKKVSFKAIAGDLLKDW* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3389 1178 Gene3D BRCT domain 664 778 IPR036420 -
Mal4g3389 1178 PANTHER DNA LIGASE 4 3 909 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Mal4g3389 1178 SUPERFAMILY BRCT domain 788 910 IPR036420 -
Mal4g3389 1178 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Mal4g3389 1178 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal4g3389 1178 SUPERFAMILY BRCT domain 653 738 IPR036420 -
Mal4g3389 1178 SMART BRCT_7 797 898 IPR001357 -
Mal4g3389 1178 SMART BRCT_7 651 727 IPR001357 -
Mal4g3389 1178 ProSiteProfiles BRCT domain profile. 649 737 IPR001357 -
Mal4g3389 1178 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Mal4g3389 1178 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Mal4g3389 1178 SUPERFAMILY Nucleic acid-binding proteins 449 598 IPR012340 -
Mal4g3389 1178 MobiDBLite consensus disorder prediction 603 627 - -
Mal4g3389 1178 Pfam BRCT domain, a BRCA1 C-terminus domain 652 734 IPR001357 -
Mal4g3389 1178 Gene3D BRCT domain 795 908 IPR036420 -
Mal4g3389 1178 Pfam ATP dependent DNA ligase C terminal region 465 582 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mal4g3389 1178 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal4g3389 1178 MobiDBLite consensus disorder prediction 1127 1165 - -
Mal4g3389 1178 ProSiteProfiles BRCT domain profile. 795 908 IPR001357 -
Mal4g3389 1178 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal4g3389 1178 MobiDBLite consensus disorder prediction 1001 1022 - -
Mal4g3389 1178 MobiDBLite consensus disorder prediction 1040 1062 - -
Mal4g3389 1178 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 5 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal4g3389 1178 CDD OBF_DNA_ligase_IV 448 590 - -
Mal4g3389 1178 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal4g3389 1178 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Mal4g3389 1178 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 597 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mal4g3389 1178 MobiDBLite consensus disorder prediction 938 1022 - -
Mal4g3389 1178 MobiDBLite consensus disorder prediction 612 627 - -
Mal4g3389 1178 Gene3D - 445 603 IPR012340 -
Mal4g3389 1178 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Mal4g3389 1178 MobiDBLite consensus disorder prediction 1124 1165 - -
Mal4g3389 1178 CDD BRCT_DNA_ligase_IV_rpt1 653 739 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3389 214 599 Core DNA Replication Machinery Family AT1G08130 28.465 2.13e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3389 K10777 - gmx:100816002 1846.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g3389 4 99293244 99308148 Mal4g3389 4 99293244 99308148 ECH